Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38360 304 / 2e-105 PRA1.B4 prenylated RAB acceptor 1.B4 (.1) AT3G56110 243 / 2e-81 PRA1.B1 prenylated RAB acceptor 1.B1 (.1.2) AT5G01640 241 / 8e-81 PRA1.B5 prenylated RAB acceptor 1.B5 (.1) AT5G05380 226 / 6e-75 PRA1.B3 prenylated RAB acceptor 1.B3 (.1) AT2G40380 219 / 3e-72 PRA1.B2 prenylated RAB acceptor 1.B2 (.1) AT5G07110 182 / 2e-57 PRA1.B6 prenylated RAB acceptor 1.B6 (.1) AT4G00005 122 / 2e-35 PRA1 (Prenylated rab acceptor) family protein (.1) AT1G55190 112 / 2e-30 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) AT3G13710 107 / 2e-28 PRA1.F4 prenylated RAB acceptor 1.F4 (.1) AT1G08770 102 / 2e-26 PRA1.E prenylated RAB acceptor 1.E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012224 [exp] 370 / 1e-131 AT2G38360 310 / 3e-108 prenylated RAB acceptor 1.B4 (.1) Lus10042246 [exp] 249 / 3e-83 AT2G38360 250 / 4e-84 prenylated RAB acceptor 1.B4 (.1) Lus10017425 [exp] 244 / 9e-82 AT2G38360 281 / 9e-97 prenylated RAB acceptor 1.B4 (.1) Lus10007533 [exp] 243 / 2e-81 AT2G38360 281 / 6e-97 prenylated RAB acceptor 1.B4 (.1) Lus10009842 [exp] 241 / 1e-80 AT2G38360 278 / 1e-95 prenylated RAB acceptor 1.B4 (.1) Lus10026404 [exp] 240 / 3e-80 AT2G38360 253 / 5e-86 prenylated RAB acceptor 1.B4 (.1) Lus10022680 [exp] 235 / 4e-79 AT2G38360 232 / 1e-78 prenylated RAB acceptor 1.B4 (.1) Lus10014234 [exp] 156 / 7e-48 AT2G38360 164 / 1e-51 prenylated RAB acceptor 1.B4 (.1) Lus10005088 [exp] 119 / 6e-33 AT1G55190 199 / 3e-65 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G126400 [exp] 254 / 1e-85 AT2G38360 209 / 2e-68 prenylated RAB acceptor 1.B4 (.1) Potri.008G074000 [exp] 248 / 2e-83 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2) Potri.008G074033 [exp] 248 / 2e-83 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2) Potri.010G183300 [exp] 246 / 7e-83 AT3G56110 239 / 9e-81 prenylated RAB acceptor 1.B1 (.1.2) Potri.006G104400 [exp] 243 / 3e-81 AT2G38360 206 / 5e-67 prenylated RAB acceptor 1.B4 (.1) Potri.019G124100 [exp] 203 / 5e-66 AT5G05380 140 / 8e-42 prenylated RAB acceptor 1.B3 (.1) Potri.005G219100 [exp] 134 / 5e-39 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G044000 [exp] 127 / 3e-36 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G054700 [exp] 126 / 1e-35 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1) Potri.002G043800 [exp] 123 / 8e-35 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10002853 pacid=23181326 polypeptide=Lus10002853 locus=Lus10002853.g ID=Lus10002853.BGIv1.0 annot-version=v1.0 ATGGCTGCAGCTTCATCCCCTCCAATCCTCCCGATCTCCAACTCCCAATCCATCTCCATCACCACCGCCGAATCCCAGCCACCGATCGCCACCCCAGCCT TCCGCTCCTTCATCAACAAGATCTCCGACACCGTCCGCAACGGCCTCTCCCAGCGCCGCCCCTGGGCAGAGCTCACCGACCGCTCCGCGTGGGCAGAGCT CGCCGACCGATCCGCCTTCTCCAAGCCGGATTCCGTCTCCGACGCCACTCTCCGCCTCCGCAAGAACTACGCCTACTTCCGCGTCAATTACCTCACCGCG GTGGCCGCGATCCTCGCCTTCTCGTTGATCTCCCATCCTTTCTCCCTCATCCTCCTGATCGGACTCCTCGCCTCGTGGATATTCCTCTACCTATTCCGCC CCGCCGATCAGCCGCTCGTCATCCTCGGCCGTACATTCAACGACATGGAGACGCTCGGGCTCCTGGCCTTGCTCAGCATCGTCGTCGTTTTCCTGACCAG CGTCGGATCCATCCTCATCTCGGGGCTCATGGTTGGAGCCGCCATCGTTTGTGCGCACGGCGCGTTCAGGGTCCCTGAGGATCTGTTTCTCGACGAGCAG GAGCCTGCCGCCGCTACTGGATTCCTGTCGTTCCTCGGTGGCGCTGCTTCGAACGTAGCTGCGACTACTGCCGCCCCTGTCGTTCTGTCCAGAGAATCAG GTGGTTCAACAACGATTCATGATCCGCCTTGA
AA sequence Show only first row Show all	>Lus10002853 pacid=23181326 polypeptide=Lus10002853 locus=Lus10002853.g ID=Lus10002853.BGIv1.0 annot-version=v1.0 MAAASSPPILPISNSQSISITTAESQPPIATPAFRSFINKISDTVRNGLSQRRPWAELTDRSAWAELADRSAFSKPDSVSDATLRLRKNYAYFRVNYLTA VAAILAFSLISHPFSLILLIGLLASWIFLYLFRPADQPLVILGRTFNDMETLGLLALLSIVVVFLTSVGSILISGLMVGAAIVCAHGAFRVPEDLFLDEQ EPAAATGFLSFLGGAASNVAATTAAPVVLSRESGGSTTIHDPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10002853 [exp]	0	1
AT1G76920			F-box family protein (.1)		Lus10018896 [exp]	1.7	0.8993
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	2.4	0.8866
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	3.2	0.8934
AT5G42050			DCD (Development and Cell Deat...		Lus10023059 [exp]	4.0	0.8794
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040127 [exp]	4.9	0.8714
AT4G29680			Alkaline-phosphatase-like fami...		Lus10008562 [exp]	5.0	0.8770
					Lus10018015 [exp]	5.3	0.8694
AT1G08315			ARM repeat superfamily protein...		Lus10008655 [exp]	8.5	0.8422
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	8.8	0.8583
AT4G19950			unknown protein		Lus10038358 [exp]	9.0	0.8666

Compare expression of checked genes

Lus10002853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.