Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38330 429 / 3e-146 MATE efflux family protein (.1) AT4G38380 277 / 6e-87 MATE efflux family protein (.1) AT1G51340 259 / 2e-80 MATE efflux family protein (.1.2) AT3G08040 233 / 1e-70 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012227 [exp] 416 / 9e-141 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10023943 [exp] 273 / 4e-85 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10039609 [exp] 258 / 6e-80 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10029517 [exp] 259 / 5e-79 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10026303 [exp] 245 / 5e-75 AT1G51340 564 / 0.0 MATE efflux family protein (.1.2) Lus10016412 [exp] 246 / 6e-75 AT1G51340 569 / 0.0 MATE efflux family protein (.1.2) Lus10042365 [exp] 243 / 2e-74 AT1G51340 571 / 0.0 MATE efflux family protein (.1.2) Lus10014440 [exp] 241 / 4e-73 AT4G38380 527 / 0.0 MATE efflux family protein (.1) Lus10027367 [exp] 238 / 4e-71 AT1G51340 664 / 0.0 MATE efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G126000 [exp] 453 / 2e-155 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.009G143400 [exp] 300 / 3e-95 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.009G053700 [exp] 292 / 2e-93 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.004G183600 [exp] 295 / 3e-93 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 293 / 3e-93 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.009G061100 [exp] 270 / 2e-84 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.016G053600 [exp] 253 / 5e-78 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.001G266900 [exp] 207 / 1e-60 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10002856 pacid=23181314 polypeptide=Lus10002856 locus=Lus10002856.g ID=Lus10002856.BGIv1.0 annot-version=v1.0 ATGGCCGCCGCTGTCGCTGCCGGTCTCTCTCACGAGCTCCTCCTCGGCGCCTGCTCGTTGCACGCTAAATCATCCCCGAAGTCTCGGATGATCTTTAAAA ACAATGCGAACGGCTCCTTCCGTTCGCTTACAATTCCGAAATCGCGGTCCAAGAAGAATGCCTTCTCTCCGATTGAAGCTTCGTCAAAGCAACCGGAAGT TTCTCCTACTCCGGACTCTGATCAACCCGTCGAGAGCGATGAATCGCCGGTTCCTCTTCTTCGCCGAGTCAGAGATGCAATTAGGTTTGATGAGCTGGGT TTGGAGATTTTGTCGATTGCATTACCTGCAGCTTTGGCTCTCGCTGCTGATCCCATAACGTCTCTAGTCGATACAGCCTTTGTTGGTCACATCGGACCGG TTGAATTAGCGGCAGTTGGAGTATCAGTTTCTGTATTCAATCTGGTTTCGAAACTGTTCAATGTCCCTTTACTTAATATCACAACATCCTTTGTTGCGGA AGAACAAGCGCTGCTGCTTTGCCCAAGGGATAGTACTAAATCTGCTGAAACTATTGATGGTTCAGATGTTGAGCCTGTAGGGCTTCCTTCCGTTTCCACT TCCTTGGCACTAGCTGCCATATTTGGCGTTGCAGAAGCTGTTGCACTTTATGTTGGCTCGGGGTTCATAATGAATATCATGGGTTTTGGAAACTTGCTGA ATGCAATCCTAGATCCTATTTTGATATTCGTTTTCAGTTTTGGTATTGGTGGAGCTGCAGTAGCTACAGTGATATCTGAGTATCTAATTTCTGTTATCCT TCTTTGGAAATTGAACGAGCAAGTGAAGCTTGTTTTCCCAGATATTGACGGAAGAAGGCTTTTGCGCTATCTGAATTCTGGTGGTCTTCTCATTGGCAGG ACGATAGCAGTGCTTCTAACAATGACGCTTTCCACATCCTTAGCTGCTAGAGGCGGGCCCATACCTATGGCTGGTCATCAAATTTGTATGGAAGTTTGGT TAGCTGTATCTTTGCTCAATGATGCTTTGGCAATTGCTGGCCAGGCTCTGTTGGCCAGTAGCTATTCCGAAGAGCAGTATGAACAAGCACGCCAAGTAAC CTACAAAGTGCTGCAGATTGGTCTGGTGACTGGAATTGGTTTGGGCGTGGCATTACTTCTTGGATTTGGAGCCTTTGCTCGCATATTTAGTACGGATACA GAAGTTCTGAAAATTGCTTGGTCTGGTGTTTGGTTCGTTGCCGGTTCACAGCCCGTGAATGCGATAGCATTCATTATTGACGGACTCTACTATGGAGTTT CAGATTACGTCTATGCTGCCTATTCCATGGTGGTAGCTGGTCTCGTTTCATCATTGTTCGTGCTCGTGGCAGCTCCTGTACATGGTCTTCCTGGCATCTG GGCAGGGTTGTTCCTCTTCATGATCTTGCGTGTCCTCGCTGGTATATGGAGGTAA
AA sequence Show only first row Show all	>Lus10002856 pacid=23181314 polypeptide=Lus10002856 locus=Lus10002856.g ID=Lus10002856.BGIv1.0 annot-version=v1.0 MAAAVAAGLSHELLLGACSLHAKSSPKSRMIFKNNANGSFRSLTIPKSRSKKNAFSPIEASSKQPEVSPTPDSDQPVESDESPVPLLRRVRDAIRFDELG LEILSIALPAALALAADPITSLVDTAFVGHIGPVELAAVGVSVSVFNLVSKLFNVPLLNITTSFVAEEQALLLCPRDSTKSAETIDGSDVEPVGLPSVST SLALAAIFGVAEAVALYVGSGFIMNIMGFGNLLNAILDPILIFVFSFGIGGAAVATVISEYLISVILLWKLNEQVKLVFPDIDGRRLLRYLNSGGLLIGR TIAVLLTMTLSTSLAARGGPIPMAGHQICMEVWLAVSLLNDALAIAGQALLASSYSEEQYEQARQVTYKVLQIGLVTGIGLGVALLLGFGAFARIFSTDT EVLKIAWSGVWFVAGSQPVNAIAFIIDGLYYGVSDYVYAAYSMVVAGLVSSLFVLVAAPVHGLPGIWAGLFLFMILRVLAGIWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38330			MATE efflux family protein (.1...		Lus10002856 [exp]	0	1
AT1G71810			Protein kinase superfamily pro...		Lus10017924 [exp]	1.7	0.9207
AT2G16980			Major facilitator superfamily ...		Lus10025087 [exp]	1.7	0.9039
AT2G38330			MATE efflux family protein (.1...		Lus10012227 [exp]	3.2	0.9171
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10021721 [exp]	6.3	0.8966
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10042837 [exp]	6.5	0.8818
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10041403 [exp]	7.1	0.8610
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Lus10010457 [exp]	7.5	0.8794
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10037394 [exp]	8.5	0.8220
AT5G26670			Pectinacetylesterase family pr...		Lus10000269 [exp]	9.4	0.8712
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019476 [exp]	9.8	0.9026

Compare expression of checked genes

Lus10002856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.