Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01630 798 / 0 BRCA2(V), ATBRCA2(V), BRCA2(V), ATBRCA2(V), BRCA2B, BRCA2(V), ATBRCA2(V), BRCA2(V), ATBRCA2(V), BRC BRCA2-like B (.1) AT4G00020 768 / 0 BRCA2(IV), BRCA2(IV), BRCA2(IV), BRCA2A, BRCA2(IV), MEE43, EDA20, BRCA2(IV), BRCA2(IV), BRCA2(IV), MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017785 [exp] 1030 / 0 AT4G00020 532 / 4e-174 MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2) Lus10000316 [exp] 846 / 0 AT5G01630 540 / 0.0 BRCA2-like B (.1) Lus10000317 [exp] 711 / 0 AT5G01630 305 / 7e-92 BRCA2-like B (.1) Lus10017786 [exp] 266 / 2e-81 AT4G00020 129 / 2e-33 MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2) Lus10012228 [exp] 104 / 4e-25 AT5G01630 71 / 1e-10 BRCA2-like B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G189600 [exp] 1002 / 0 AT5G01630 1131 / 0.0 BRCA2-like B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00634 [flax] [poplar] BRCA2 BRCA2 repeat CL0021 [flax] [poplar] OB PF09103 [flax] [poplar] BRCA-2_OB1 BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
Representative CDS sequence Show only first row Show all	>Lus10002857 pacid=23181312 polypeptide=Lus10002857 locus=Lus10002857.g ID=Lus10002857.BGIv1.0 annot-version=v1.0 ATGTCGATCTGGCGGATGTTCTCCGACGCCGGGAATGATTTCCAATGGGAGGCGTCCGGTGGAGTGGCGCAATCCAAACGACCAGTCGAGGCGATGACCC ATCCGATTTCACCTGCTGCCAGCTCTAGTTCTCGTCTTCCTTCCATGACTGACCTCCTGCTCGAAGGCTGTTCAAAGCTTCTGGAGAAGGGTAATGATGA AGCAGGAAGTGCCCCAACGTTTCGAACTGGATCAGGAAAATCAGTGGTGCTCAAACAATCTTCGATTTCCAAAGCGTTGGCAGTTCTCAACGATGAGGAT GGCATCAGCTCTGCAACTAATAGAGGACGACCTGGCTGTTTCTCCAATTCGCTTTTCCAAACTGCCTCTGGTAAATCAGTCGGTATATCTTCTAATGGTC TCGTCAGAGCTAGGAAGTTGTTGGGCATGGAAGAAGATGGAGATGACGACTCTTCTAGTTTTGATGGATTTCGATGTCCACAAAGACCATCAGCTACGAA AGAGCACCTCGATTGGCAGAGTTCGAATCATACGGGGATGAGAGATAGTCCGACCAAGGATTTTGCAATGTACGATTGCAGTCCAGCCTTAACTCGTAAA ATTGGGTTTGCAGGAAGCAGACCGATGAACGAGTTTACTCCAAACTTGTTGCAGTCAAAAGTGTATCCAGCTGCTAAACCTCCTCCGGTAAAGTTTCAGA CAGCTGGTGGTAGATCTTTATCTGTTTCTAGTGATGCGTTGAAGCGTGCTAGAAGCCTTCTTGGGGATCCAGACTTGGGCAGTTTCTTCAGCGAGGGGGA TAATAAATGTGATCCAGTTGTCACAGCTTCTGAAGAGCGTAGAGCCAGTGAACCTTCAACCAGCAATGGCAGGGAAACGTACTCAGGATTTACGTATCCA CCTGCTGCAAGGAGCAAATGCATGCAAAAGAATTTTACGTCCCCGCTTAAAGCATCGTCAAACCGGTTTCAATCTGCGTTGAACAATGGAAAAGCTCTGT TTGGGAGCAACTTGATCTCCCAATTTGATGCTGTTGAGAACGACCGTGCTGAAGAGAACAATATTTTGAGTGATAGGTCCCATATAAATGGTCAAGCGAG AGAAATTTCTTCAGGAAATAGCACTAATTCGAATACTAATCAACTCCCGAGGCCATGTCGCAGGGCGTTGGTTGATATCTCTAACACTATGCAGATAAGT TCAGCAGACAATAGACAAGTCAGCGGCGAAAAGAGGAGGATGAGGAGTGTTTCAGTTTCTCCGTTCAAGAGGCCACGGAATTCTAAGTTTATAACCCCTT TGAGCAAGAATCACTGTCCCATTGGTTTATCTGCTCGGTCTTCTGAGCCTAATGCTTGGAGAAGAAGGATGTCAACTAAATATCCTGTTCAAACTTCAAG GATGCAAATAAAAGAATACTTTGGCGTGCCACTTCCTCACCGGAGGAAGTTGAAAGAGCAAGCAGCAGGTATTAGATCCAACAACGCACCTAATTATTTA TTTCCTGATCAGTCTGGCACGAATTGCATCGGAGTAGAAGTCCTTCGCCGCATGCTCACTCAGTGTGGAGCTTCTGAGCAATGTGCTTCGGAAGAATACG AAAGAGAAATGAATCATGGACACCGGTCTGCACTCAAGAGGGTTCTTGAAGGCGATGTACCTCCTTCCTCGATGATGATCCTGTGCATTTCTGCCGTCTA TGCTAGTTCTGAAGCAGATACCGAAGATTATCCCCCAGTTCTAAACGACGGGCATCAAGCTGCTTCTGCGGCGAGGATACAGCTGACCGATGGATGGTAT GCAGTGGACGCCCTGTTAGATGCCCCGTTGTCGAAGCATCTTTCTACTCAAAAGCTATTTGTTGGACAGAAACTTCGAATATGGGGAGCAGGATTGTCTG GATGGGTCAACCCGGTTTCACCACTTGAGGCATCAAAGGCTGTTAGTTTGCTGTTACATATAAATGGAACGTATAGAGCACATTGGGCTGATCGGCTTGG TTTGTGTAAGAAAAGTGGTGCTCCTTTGGCCTTCAGCTGCATCAAGAGTAATGGAGGTCCAGTCCCTCATACGTTAGTTGGAGTGACCCGCATATACCCT GTTCTCTACAAGGAGAAGTTTCCTGCCGGTGGATCTATAGTGAGGCCAGAGAGAATGGAGGCTAAGATGATACAAGTTTTTCACGACAGGCGGTCAGCTG TCATGGAGGGTGTAGTTTCGGAGTTTCAAAGGGGAACCAAAAGCTCTCTCTACAATGACAGTGATAGCGAAGAAGGTGCAAAGCTTTTGAAAATACTGGA GACGTCAGCTGAACCAGAACTTCTAATGGCAGGGATGAGCTCAAAGCAACTTACTAGTTTCGTTTCTTATCAGGAAAAAGTACAGGCCACCAAACAAATG AACATGGACAAAGCAATCCAGAAAGCTCTGCAAGATGCTGGCTTAGAGAAGAGAGACGTGTCTCCCTTTATGAGAGTTAGAGTGGTCAGTTTAACTACTG CCGGAGGAGGAAATTGCCGTTCAAAAGAAGGGCAGGCGTATGCTGTTGCAGGACTTGTGCCGGTGAACTCTGAATCAAATACCCTTTACTTGCAAGCTAG AGGATCCGGAAACAATTGGCAACCTTTGTCTCCCGCTCAAACCCAAAATTTCGAGCCATTTTTCCGTCCTCGGATATCGATCTCATTATCCAACTTGGGT GAACTTGCATTTGGCAGCGAATTCGACATAGCTGCAGTGGTTGTGCATGTGGGTGAGGTTTATGGAACCGGTTCATTCGCGAAACAGTGGGTATTTGTAA CTGATAACTCCATCTCCGCATTGAATTCAGAGGCTGCAAATTCCTTACTAGTCTTGAGCTTCAACTCCTCTTCCATGGACAAGGATTCAGCTACACCAGT CAACCACAATCTAGCAGGATCAATTGTTGGCTTTTGCAACATTATCAAGAGAAAGAAAGATCGGAGTAACCAGTTATGGGTAGCTGAAGCAACTGAAAAC TCAACTTACTATCTTAACTTCGACTCCCCGAACTGCTCCCACCTCAGAAAGACTGCCTCCTCCGTTCAAAGCTGGACCAAGAATTCTACCTCGGTTATCA GTAGACTCAAGGAAAAGGTTCTGAAAATCGTCAATGGATCTAAAAGCTAG
AA sequence Show only first row Show all	>Lus10002857 pacid=23181312 polypeptide=Lus10002857 locus=Lus10002857.g ID=Lus10002857.BGIv1.0 annot-version=v1.0 MSIWRMFSDAGNDFQWEASGGVAQSKRPVEAMTHPISPAASSSSRLPSMTDLLLEGCSKLLEKGNDEAGSAPTFRTGSGKSVVLKQSSISKALAVLNDED GISSATNRGRPGCFSNSLFQTASGKSVGISSNGLVRARKLLGMEEDGDDDSSSFDGFRCPQRPSATKEHLDWQSSNHTGMRDSPTKDFAMYDCSPALTRK IGFAGSRPMNEFTPNLLQSKVYPAAKPPPVKFQTAGGRSLSVSSDALKRARSLLGDPDLGSFFSEGDNKCDPVVTASEERRASEPSTSNGRETYSGFTYP PAARSKCMQKNFTSPLKASSNRFQSALNNGKALFGSNLISQFDAVENDRAEENNILSDRSHINGQAREISSGNSTNSNTNQLPRPCRRALVDISNTMQIS SADNRQVSGEKRRMRSVSVSPFKRPRNSKFITPLSKNHCPIGLSARSSEPNAWRRRMSTKYPVQTSRMQIKEYFGVPLPHRRKLKEQAAGIRSNNAPNYL FPDQSGTNCIGVEVLRRMLTQCGASEQCASEEYEREMNHGHRSALKRVLEGDVPPSSMMILCISAVYASSEADTEDYPPVLNDGHQAASAARIQLTDGWY AVDALLDAPLSKHLSTQKLFVGQKLRIWGAGLSGWVNPVSPLEASKAVSLLLHINGTYRAHWADRLGLCKKSGAPLAFSCIKSNGGPVPHTLVGVTRIYP VLYKEKFPAGGSIVRPERMEAKMIQVFHDRRSAVMEGVVSEFQRGTKSSLYNDSDSEEGAKLLKILETSAEPELLMAGMSSKQLTSFVSYQEKVQATKQM NMDKAIQKALQDAGLEKRDVSPFMRVRVVSLTTAGGGNCRSKEGQAYAVAGLVPVNSESNTLYLQARGSGNNWQPLSPAQTQNFEPFFRPRISISLSNLG ELAFGSEFDIAAVVVHVGEVYGTGSFAKQWVFVTDNSISALNSEAANSLLVLSFNSSSMDKDSATPVNHNLAGSIVGFCNIIKRKKDRSNQLWVAEATEN STYYLNFDSPNCSHLRKTASSVQSWTKNSTSVISRLKEKVLKIVNGSKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10002857 [exp]	0	1
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10024521 [exp]	1.4	0.9724
AT4G15890			binding (.1)		Lus10001471 [exp]	2.6	0.9643
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Lus10010010 [exp]	2.8	0.9692
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10019866 [exp]	2.8	0.9661
AT4G02110			transcription coactivators (.1...		Lus10010017 [exp]	3.5	0.9659
AT1G26330			DNA binding (.1.2)		Lus10000645 [exp]	3.5	0.9677
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10008729 [exp]	5.5	0.9606
AT4G02110			transcription coactivators (.1...		Lus10001455 [exp]	6.2	0.9546
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10040517 [exp]	6.7	0.9660
AT5G43530			Helicase protein with RING/U-b...		Lus10041156 [exp]	6.7	0.9584

Compare expression of checked genes

Lus10002857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.