Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01620 510 / 0 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT2G38320 339 / 2e-115 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT1G73140 327 / 1e-110 TBL31 Plant protein of unknown function (DUF828) (.1) AT2G40320 318 / 6e-107 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT3G11030 307 / 2e-102 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT5G01360 286 / 2e-94 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G55990 286 / 1e-93 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 278 / 3e-91 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT2G40160 249 / 8e-80 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G58600 207 / 4e-64 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012229 [exp] 635 / 0 AT5G01620 509 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Lus10022676 [exp] 359 / 4e-123 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10014238 [exp] 315 / 3e-106 AT2G38320 495 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10040953 [exp] 308 / 1e-102 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10009839 [exp] 307 / 2e-102 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10042845 [exp] 289 / 2e-95 AT1G73140 559 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10027813 [exp] 286 / 2e-94 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10028141 [exp] 286 / 3e-94 AT1G73140 563 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10028974 [exp] 275 / 1e-89 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G125600 [exp] 549 / 0 AT5G01620 657 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Potri.016G125500 [exp] 333 / 4e-113 AT2G38320 541 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Potri.001G376700 [exp] 316 / 3e-106 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.010G184000 [exp] 313 / 1e-104 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.008G073300 [exp] 311 / 4e-104 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.016G119100 [exp] 285 / 4e-94 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.010G187600 [exp] 278 / 2e-90 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 273 / 2e-89 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G069900 [exp] 272 / 4e-88 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 261 / 2e-84 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10002858 pacid=23181322 polypeptide=Lus10002858 locus=Lus10002858.g ID=Lus10002858.BGIv1.0 annot-version=v1.0 ATGTCTGATCAATTGGCTTGCCATAAGCATGGGAGGTCTGATTTGGAGTATCAGAAATGGAGATGGCAGCCAAGCGGCTGCAATTTGAAGAGATGGAATG CGGTGGAAATGTGGGAGAAATTGAGAGGGAAGAGGATGATGTTCGTCGGTGATTCCTTGAACAGAGGACAGTGGATATCAATGGTGTGTTTGTTGCAGTC GGTGATCCCAGCTGATCAGAAGTCCATCACTCCCAATGCTCAGCTTACTATCTTCAGGGCCGAGAACTACAATGCGACGGTGGAGTTTCTATGGGCGCCG CTGCTGGTGGATTCTAACTCGGACGACCCAGTGAATCACAGGCTAGGTCAGAAGATAATCCGTCCGGATTCGGTTCTAAAGCATTCGTCGAAGTGGGAGC AAGCGGATATACTCGTGTTCAACTCTTACCTGTGGTGGAGGATACCTCCCCTCAAGCTCTTATGGAGTGACGAGAAGGAGGGGTCCTGCGAAGAACTCGA CGGGCTAACAGCTATGGAGTTGTCGATGCAGACGTGGGCAGACAAGATCGCTTCTGAGCCCAAGTACCTCGATAAACAAGTGTTCTTCGTCACGATGTCA CCTACACATCTCTGGAGCAGAGAATGGCTGCCTGGAAGCGACGGAAACTGCTACAACGAGAAAGCTCCGATCGATCAGGAAGGCTACTGGGGAAGCGGTT CTGATTTACCGACGATGCGAATGGTGGACCAAGTCCTTGGCAAGCTGGGTTCAAGGGTTTCTGTTCTCAACATAACTCAGCTGTCCGAGTATAGAAAGGA TGGGCACCCTTCAATATACCGCAAGTTTTGGGAGACATTACGACCCGAACAGCTTGCGAATCCTCCCAGTTACTCCGACTGCATGCATTGGTGCCTCCCC GGGGTGCCTGATGTTTGGAATGAATTGCTCTTCCACCATTTGTAG
AA sequence Show only first row Show all	>Lus10002858 pacid=23181322 polypeptide=Lus10002858 locus=Lus10002858.g ID=Lus10002858.BGIv1.0 annot-version=v1.0 MSDQLACHKHGRSDLEYQKWRWQPSGCNLKRWNAVEMWEKLRGKRMMFVGDSLNRGQWISMVCLLQSVIPADQKSITPNAQLTIFRAENYNATVEFLWAP LLVDSNSDDPVNHRLGQKIIRPDSVLKHSSKWEQADILVFNSYLWWRIPPLKLLWSDEKEGSCEELDGLTAMELSMQTWADKIASEPKYLDKQVFFVTMS PTHLWSREWLPGSDGNCYNEKAPIDQEGYWGSGSDLPTMRMVDQVLGKLGSRVSVLNITQLSEYRKDGHPSIYRKFWETLRPEQLANPPSYSDCMHWCLP GVPDVWNELLFHHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Lus10002858 [exp]	0	1
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Lus10032267 [exp]	2.8	0.8923
AT5G11350			DNAse I-like superfamily prote...		Lus10013119 [exp]	3.7	0.8873
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10037760 [exp]	4.9	0.8871
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10012937 [exp]	5.3	0.8871
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10015900 [exp]	6.9	0.8811
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10016676 [exp]	8.4	0.8840
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Lus10025886 [exp]	8.8	0.8560
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Lus10005888 [exp]	11.4	0.8352
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10027316 [exp]	13.4	0.8600
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10009265 [exp]	13.5	0.8773

Compare expression of checked genes

Lus10002858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.