Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016944 [exp] 98 / 1e-25 ND / Lus10027774 [exp] 96 / 3e-25 ND / Lus10035524 [exp] 71 / 3e-15 ND / Lus10001546 [exp] 59 / 1e-10 ND / Lus10006537 [exp] 44 / 2e-05 ND / Lus10006539 [exp] 43 / 4e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002859 pacid=23181311 polypeptide=Lus10002859 locus=Lus10002859.g ID=Lus10002859.BGIv1.0 annot-version=v1.0 ATGGCAAATCCTCATTTATCTTCAGTGGACTTGTATGTGTACATTTACAAGGAAGATCCGTATGCTTCAGATTTGCTAACATACAAGGATGATGACCCTT GGCACGATCGCAGTTACAGGGTTGGTCCTTCAAACGAGGCACAATACAAAGCCCTAGAGCTTCACGGCATCACCAATTCACCATCCAGGGTGAATACCAG GGAACGAAGGATCACCCGAAACCAATTGAGCCAACTCTTCGACGACTTGACTCTCACTTTATCCGACGGCCAGAAACATTCGATAGTTGCTAACTGTCAA GGCCTTTGTTTCCTTCTCATCAAGATCGCCTTTGTTCAGCGGCTGCGGATAAACGACTGCTTTGGTCGGTCCAAATACGGAGTGAAGCCTCGAGCGGATA TGTCGCTGGTGTGGCATACCAAATGCCACATGACCACGGTGGCCGTGTTGATGGACATCGGAGAGTTGCTGAAGAAGAAGGACGAGGAGAAGAAAAAGGA GTTGGAGGAGAAGGAGAAGGAGCTCGATGCTATGAATGAAGAGACTCGTGGAGAGAATTGA
AA sequence Show only first row Show all	>Lus10002859 pacid=23181311 polypeptide=Lus10002859 locus=Lus10002859.g ID=Lus10002859.BGIv1.0 annot-version=v1.0 MANPHLSSVDLYVYIYKEDPYASDLLTYKDDDPWHDRSYRVGPSNEAQYKALELHGITNSPSRVNTRERRITRNQLSQLFDDLTLTLSDGQKHSIVANCQ GLCFLLIKIAFVQRLRINDCFGRSKYGVKPRADMSLVWHTKCHMTTVAVLMDIGELLKKKDEEKKKELEEKEKELDAMNEETRGEN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002859 [exp]	0	1
					Lus10035062 [exp]	1.0	0.9884
AT4G37445			unknown protein		Lus10001408 [exp]	1.7	0.9832
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10033212 [exp]	2.2	0.9682
					Lus10017955 [exp]	2.4	0.9844
					Lus10032767 [exp]	4.6	0.9656
					Lus10035048 [exp]	4.9	0.9697
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10028306 [exp]	5.2	0.9642
					Lus10008289 [exp]	6.3	0.9633
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10026165 [exp]	6.5	0.9667
AT4G10790			UBX domain-containing protein ...		Lus10039951 [exp]	6.6	0.9609

Compare expression of checked genes

Lus10002859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.