Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43770 607 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 142 / 1e-39 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 125 / 3e-33 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 102 / 1e-23 transducin family protein / WD-40 repeat family protein (.1.2) AT5G08390 101 / 3e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 99 / 6e-23 WD-40 repeat family protein / notchless protein, putative (.1) AT5G64730 97 / 6e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 98 / 3e-22 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 97 / 9e-22 TAF5 TBP-associated factor 5 (.1) AT1G61210 96 / 2e-21 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012230 [exp] 673 / 0 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003390 [exp] 250 / 6e-84 AT2G43770 236 / 6e-79 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 133 / 6e-36 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 132 / 1e-35 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 122 / 7e-32 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 121 / 1e-31 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10001410 [exp] 114 / 9e-28 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10002211 [exp] 102 / 1e-27 AT2G43770 96 / 6e-26 Transducin/WD40 repeat-like superfamily protein (.1) Lus10001045 [exp] 111 / 8e-27 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G096900 [exp] 625 / 0 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G128001 [exp] 184 / 2e-58 AT2G43770 196 / 2e-63 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 143 / 7e-40 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 131 / 1e-35 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 127 / 6e-34 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 106 / 3e-26 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 102 / 6e-24 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002700 [exp] 100 / 5e-23 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.006G045800 [exp] 99 / 1e-22 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.009G058000 [exp] 98 / 2e-22 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10002860 pacid=23181327 polypeptide=Lus10002860 locus=Lus10002860.g ID=Lus10002860.BGIv1.0 annot-version=v1.0 ATGCAAGTAATTCCTAGCGAAAACCATCTTTCAGTCTCTGGTCCAAGGCCGATGGAATGGTCAACGGTTCCATACTCTGGACCAGGAGGAGCACCCGGTG GTGCTAACGGAAAAGGACGGACTTCAAGCTTGGACTCGCCGATAATGCTGCTCACCGGTCATCAGAGTGCCATCTACACCATGAAATTCAACCCGGCTGG AACCATCATCGCATCCGGCTCACACGACAAGGAGATATTCCTATGGTACATACATGACGAGTGCAAAAACTTCATGGTCTTAAAGGGGCACAAGAACGCA GTTCTCGATCTCCACTGGACATCCGATGGCTCGCAGATAATCTCCGCCAGCCCCGACAAAACCGTCAGAGCTTGGGACGTCGAGACAGGGAAACAGATCA AGAAAATGGCGGAGCACTCTTCCTTCGTGAACTCCTGCTGTTCTTCCCGACGAGGCCCTCCACTCGTCGTGAGTGGTTCCGACGACGGGACAGCTAAGCT TTGGGACCTCCGCCAGCGTGGAGCAATCCAAACCTTTCCGGACAAGTATCAAATTACGGCAGTAGCCTTCTCGGACGCTTCGGACAAGATCTTCACAGCC GGGATCGACAACGAAGTGAAAGTATGGGACATTCGTAAAGCAGAAGTGACGATGAAGCTCGAGGGGCATCAGGACATGGTGACTGGAATGCAGTTGAGCC CCGACGGTTCGTATCTTCTGACGAATGGTATGGATTGCAAGCTGTGCGTATGGTATATGAGGCCTTACGCTCCGCAGCATCGGTGCGTGAAGGTTCTCGA AGGGCACCAGCATAATTTCGAGAAGAATCTGCTGAAATGCAGCTGGTCTCCCGATGGAAGTAAGGTGAGTGCTGGTAGCTCGGACCGGATGGTGTACATA TGGGACACGACATCGAGAAGGATACTGTACAAGCTTCCGGGGCATACTGGGTCGGTTAACGAGTGCGTGTTTCACCCGACTGAACCGATCATTGGATCGT GCGGCAGTGACAAGCATATTTACCTTGGGGAGATTTGA
AA sequence Show only first row Show all	>Lus10002860 pacid=23181327 polypeptide=Lus10002860 locus=Lus10002860.g ID=Lus10002860.BGIv1.0 annot-version=v1.0 MQVIPSENHLSVSGPRPMEWSTVPYSGPGGAPGGANGKGRTSSLDSPIMLLTGHQSAIYTMKFNPAGTIIASGSHDKEIFLWYIHDECKNFMVLKGHKNA VLDLHWTSDGSQIISASPDKTVRAWDVETGKQIKKMAEHSSFVNSCCSSRRGPPLVVSGSDDGTAKLWDLRQRGAIQTFPDKYQITAVAFSDASDKIFTA GIDNEVKVWDIRKAEVTMKLEGHQDMVTGMQLSPDGSYLLTNGMDCKLCVWYMRPYAPQHRCVKVLEGHQHNFEKNLLKCSWSPDGSKVSAGSSDRMVYI WDTTSRRILYKLPGHTGSVNECVFHPTEPIIGSCGSDKHIYLGEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002860 [exp]	0	1
AT5G35530			Ribosomal protein S3 family pr...		Lus10030502 [exp]	2.2	0.9692
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10012833 [exp]	3.5	0.9652
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	4.9	0.9669
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10004628 [exp]	5.5	0.9644
AT5G44500			Small nuclear ribonucleoprotei...		Lus10013108 [exp]	6.7	0.9652
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10015198 [exp]	6.9	0.9664
AT1G60620		ATRPAC43	RNA polymerase I subunit 43 (....		Lus10018468 [exp]	7.5	0.9516
AT2G04390			Ribosomal S17 family protein (...		Lus10004208 [exp]	8.4	0.9618
AT2G47790			Transducin/WD40 repeat-like su...		Lus10001029 [exp]	9.2	0.9528
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10023565 [exp]	9.5	0.9582

Compare expression of checked genes

Lus10002860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.