Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08890 299 / 2e-105 Protein of unknown function, DUF538 (.1.2) AT5G37070 287 / 7e-101 Protein of unknown function, DUF538 (.1) AT5G01610 287 / 7e-101 Protein of unknown function, DUF538 (.1) AT2G03350 173 / 1e-55 Protein of unknown function, DUF538 (.1) AT5G16380 57 / 2e-10 Protein of unknown function, DUF538 (.1) AT3G07470 54 / 1e-09 Protein of unknown function, DUF538 (.1) AT3G07460 50 / 5e-08 Protein of unknown function, DUF538 (.1.2) AT5G19590 47 / 5e-07 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012232 [exp] 348 / 6e-125 AT3G08890 297 / 1e-104 Protein of unknown function, DUF538 (.1.2) Lus10022674 [exp] 303 / 2e-106 AT3G08890 273 / 1e-94 Protein of unknown function, DUF538 (.1.2) Lus10012498 [exp] 228 / 3e-78 AT3G08890 214 / 1e-72 Protein of unknown function, DUF538 (.1.2) Lus10026639 [exp] 169 / 9e-54 AT2G03350 262 / 1e-90 Protein of unknown function, DUF538 (.1) Lus10030420 [exp] 169 / 9e-54 AT2G03350 259 / 1e-89 Protein of unknown function, DUF538 (.1) Lus10037126 [exp] 145 / 6e-45 AT2G03350 235 / 3e-80 Protein of unknown function, DUF538 (.1) Lus10036804 [exp] 139 / 2e-42 AT2G03350 224 / 9e-76 Protein of unknown function, DUF538 (.1) Lus10009855 [exp] 68 / 1e-14 AT1G02816 169 / 2e-54 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 51 / 6e-08 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G104000 [exp] 288 / 2e-101 AT3G08890 296 / 1e-104 Protein of unknown function, DUF538 (.1.2) Potri.016G125300 [exp] 285 / 5e-100 AT3G08890 292 / 8e-103 Protein of unknown function, DUF538 (.1.2) Potri.010G162400 [exp] 184 / 6e-60 AT2G03350 277 / 1e-96 Protein of unknown function, DUF538 (.1) Potri.008G092500 [exp] 177 / 4e-57 AT2G03350 281 / 4e-98 Protein of unknown function, DUF538 (.1) Potri.014G127500 [exp] 69 / 7e-15 AT4G02370 167 / 1e-53 Protein of unknown function, DUF538 (.1) Potri.013G014600 [exp] 67 / 4e-14 AT1G02816 181 / 8e-59 Protein of unknown function, DUF538 (.1) Potri.006G158952 [exp] 54 / 1e-09 AT5G19590 201 / 3e-67 Protein of unknown function, DUF538 (.1) Potri.001G084200 [exp] 39 / 0.0006 AT4G24130 208 / 5e-70 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10002862 pacid=23181321 polypeptide=Lus10002862 locus=Lus10002862.g ID=Lus10002862.BGIv1.0 annot-version=v1.0 ATGGATCAGATATTCAACAAGGTCGGCTCCTACTGGTTCAACCAGAAGGCCAACAAGGAGATCAACTCCGTCGGCGACGACATCAACTCGTTATCGGACA GTATCGGAGGAGGAGCTAAATGGGTAGTCAACAAGATCAAAGGAAAAATGCAGAAGCCATTGCCGGAGCTGCTAAAGGAGTACGACTTGCCAGTGGGGAT CTTCCCACGAGACGCCACAAACTACGAGTTCAACGAGGAGACGCACAAGCTAACGGTTTTCATCCCTCAAATATGCGACGTCGGGTACAAGGACTCATCG GTGCTGCGTTTCAACACCCAGGTGACCGGATACCTGGAGAAAGGGAAGCTGTCTGACGTGGAAGGGATGAAGACCAAGGTGATGATCTGGGTCAAAGTGA CTTCCATCACTTCCGAAGGATCGAAGGTGCATTTCACAGCGGGGATGAAGAAGAGCCGGAGCAGAGATGCTTACGAGGTTCTTAGAGACGGACTCCACGT CGAGAAGTTCTAA
AA sequence Show only first row Show all	>Lus10002862 pacid=23181321 polypeptide=Lus10002862 locus=Lus10002862.g ID=Lus10002862.BGIv1.0 annot-version=v1.0 MDQIFNKVGSYWFNQKANKEINSVGDDINSLSDSIGGGAKWVVNKIKGKMQKPLPELLKEYDLPVGIFPRDATNYEFNEETHKLTVFIPQICDVGYKDSS VLRFNTQVTGYLEKGKLSDVEGMKTKVMIWVKVTSITSEGSKVHFTAGMKKSRSRDAYEVLRDGLHVEKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08890			Protein of unknown function, D...		Lus10002862 [exp]	0	1
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10043394 [exp]	1.0	0.9052
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Lus10039392 [exp]	1.7	0.8499
AT1G29530			unknown protein		Lus10025373 [exp]	4.5	0.8390
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10035041 [exp]	4.5	0.8531
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10006868 [exp]	4.9	0.8311
AT5G61310			Cytochrome c oxidase subunit V...		Lus10001454 [exp]	7.9	0.8148
AT5G35460			unknown protein		Lus10017161 [exp]	10.6	0.8213
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10019449 [exp]	11.5	0.7997
AT4G25150			HAD superfamily, subfamily III...		Lus10013478 [exp]	11.7	0.8074
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10014929 [exp]	12.4	0.7774

Compare expression of checked genes

Lus10002862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.