Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01660 81 / 2e-17 unknown protein AT3G11000 63 / 3e-11 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2) AT3G27090 44 / 6e-05 DCD (Development and Cell Death) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012220 [exp] 105 / 4e-26 AT5G01660 224 / 1e-66 unknown protein Lus10018307 [exp] 63 / 4e-11 AT5G01660 276 / 3e-82 unknown protein Lus10023059 [exp] 42 / 0.0002 AT5G42050 355 / 8e-122 DCD (Development and Cell Death) domain protein (.1) Lus10032412 [exp] 42 / 0.0002 AT5G42050 359 / 1e-123 DCD (Development and Cell Death) domain protein (.1) Lus10012533 [exp] 42 / 0.0003 AT3G27090 432 / 5e-154 DCD (Development and Cell Death) domain protein (.1) Lus10041557 [exp] 42 / 0.0003 AT3G27090 428 / 2e-152 DCD (Development and Cell Death) domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G074200 [exp] 78 / 3e-16 AT5G01660 488 / 2e-164 unknown protein Potri.016G127600 [exp] 76 / 1e-15 AT5G01660 628 / 0.0 unknown protein Potri.003G141900 [exp] 44 / 6e-05 AT5G42050 285 / 4e-94 DCD (Development and Cell Death) domain protein (.1) Potri.001G088800 [exp] 44 / 7e-05 AT5G42050 289 / 2e-95 DCD (Development and Cell Death) domain protein (.1) Potri.017G069100 [exp] 41 / 0.0005 AT3G27090 426 / 1e-151 DCD (Development and Cell Death) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10539 [flax] [poplar] Dev_Cell_Death Development and cell death domain
Representative CDS sequence Show only first row Show all	>Lus10002863 pacid=23181325 polypeptide=Lus10002863 locus=Lus10002863.g ID=Lus10002863.BGIv1.0 annot-version=v1.0 ATGGATGCGAAGAATGCACGACCGTTTAAAACCGTGTTTAGGGTAGAGTTGAGAAGCGTGATATTTGGCTGCACCGAGGACAACATTGCACACTCCTTAA AGAGAAGATCTAAAATTGATGTTGGCTTGCCCGTGTTTCTGTTCAACTTTGATGACAAGACACTGCATGGCGGCTTTTCCCGCGCTGACGGATCGATTCC CTTGGCAGAAACACTGCCTGTCGGCTTTTACCAACATGACAGATCGAAGCTCACAGCAGGCCAGGTTCAAATTCAGGTTAGCAAGCAATGTCAATCGTTG CCTCTAGCACGGTTGAAGCCGATACTTGAAGACTATTTCTTTAACTACGACTATCCTTACTTTGAGCTACATGGTGATCAAACAGAAAAGTTTTTGGCCT TGTTCCAATCTTCACCGCTCGCCCCCAAGAATGACAACGGCCTCCATTTGGATCTTACCAACTCAATCTCTATCATTGAAGCCATCTCAGCAGAACCCGT GAGAGTCTGTTTGCGGAAAAAGGCAACTCGTTTACTGCCACACTCCAATATACAGCATGTTGTTAAATGGATAAGTGATTCAAGGTGTTCAATGCCATAT TCAGTTACAATGGCTGTTCCCTGCAGGGACAAGGAGGCTCCGGGAGAACGATTGGAACTGCCGAAATGCGTGAAGATCTCTTCATCATCGGAGAACGTGG TCATGGAGACTCAGGAGGAGTAA
AA sequence Show only first row Show all	>Lus10002863 pacid=23181325 polypeptide=Lus10002863 locus=Lus10002863.g ID=Lus10002863.BGIv1.0 annot-version=v1.0 MDAKNARPFKTVFRVELRSVIFGCTEDNIAHSLKRRSKIDVGLPVFLFNFDDKTLHGGFSRADGSIPLAETLPVGFYQHDRSKLTAGQVQIQVSKQCQSL PLARLKPILEDYFFNYDYPYFELHGDQTEKFLALFQSSPLAPKNDNGLHLDLTNSISIIEAISAEPVRVCLRKKATRLLPHSNIQHVVKWISDSRCSMPY SVTMAVPCRDKEAPGERLELPKCVKISSSSENVVMETQEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01660			unknown protein		Lus10002863 [exp]	0	1
AT4G16160		ATOEP16-2, ATOE...	Mitochondrial import inner mem...		Lus10016878 [exp]	1.4	0.8829
AT3G44910		ATCHX12	cation/H+ exchanger 12, cation...		Lus10040962 [exp]	1.4	0.8960
AT1G53200			unknown protein		Lus10011648 [exp]	1.7	0.8821
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Lus10032596 [exp]	6.5	0.7739
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10009917 [exp]	8.7	0.8457
					Lus10016386 [exp]	11.0	0.6786
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032214 [exp]	11.2	0.8430
					Lus10026075 [exp]	11.2	0.8169
AT5G65020		ANNAT2	annexin 2 (.1.2)		Lus10024054 [exp]	11.6	0.6716
AT2G14100		CYP705A13	"cytochrome P450, family 705, ...		Lus10024582 [exp]	13.2	0.8448

Compare expression of checked genes

Lus10002863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.