Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25590 311 / 6e-101 Protein of unknown function (DUF630 and DUF632) (.1) AT1G52320 278 / 3e-91 unknown protein AT1G02110 113 / 4e-28 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 101 / 4e-24 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT3G51290 101 / 4e-24 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT4G39790 100 / 1e-23 Protein of unknown function (DUF630 and DUF632) (.1) AT3G60320 99 / 3e-23 Protein of unknown function (DUF630 and DUF632) (.1) AT2G17110 91 / 2e-20 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 90 / 4e-20 Protein of unknown function (DUF630 and DUF632) (.1) AT2G34670 88 / 2e-19 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038627 [exp] 447 / 4e-158 AT5G25590 538 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10037901 [exp] 427 / 4e-150 AT5G25590 627 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10022116 [exp] 387 / 5e-131 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10000014 [exp] 289 / 5e-100 AT5G25590 209 / 3e-64 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025777 [exp] 294 / 6e-95 AT1G52320 652 / 0.0 unknown protein Lus10035887 [exp] 291 / 1e-93 AT1G52320 747 / 0.0 unknown protein Lus10028431 [exp] 116 / 3e-29 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10041884 [exp] 115 / 3e-29 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10042910 [exp] 108 / 1e-26 AT3G60320 727 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G036400 [exp] 343 / 3e-113 AT5G25590 656 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G244100 [exp] 336 / 1e-110 AT5G25590 603 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.003G054800 [exp] 296 / 9e-96 AT1G52320 626 / 0.0 unknown protein Potri.001G181100 [exp] 292 / 2e-94 AT1G52320 615 / 0.0 unknown protein Potri.005G112300 [exp] 123 / 1e-31 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.007G056700 [exp] 117 / 1e-29 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.014G047400 [exp] 110 / 4e-27 AT3G60320 862 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G177200 [exp] 108 / 2e-26 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 107 / 3e-26 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.002G137600 [exp] 104 / 4e-25 AT3G60320 699 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632)
Representative CDS sequence Show only first row Show all	>Lus10002864 pacid=23181310 polypeptide=Lus10002864 locus=Lus10002864.g ID=Lus10002864.BGIv1.0 annot-version=v1.0 ATGGAGAAGGAGGCAGAGATGACTTGGATTCCGAGGATTACGAAACTCATGCCACTGTTTTGGATAAGTTGTTGGCCTGGGAAAAGAAACTCTTTGATGA AGTCAAGTCTCACTGAGCAGCAAGGAGAGTTGATGAAGCTGGAGTACAAAAGGAAGGTTGCTTTGCTGAACAAGCAGAAGAAACGTGGTGCTAGTGCTGA CTCCTTGGAAAAGACTAAAGCGGCCGTGAGTCATTTGCACACTGGATATATTGTTGATATGCAATCTATGGACTCAACTGTTGCTGAAGTTAATCACATA CGCGATAACCAGTTGTATCCTAAACTTGTTGCTCTTGTCCAAGGGATGTCGAAGATGTGGGGGAACATGTCGATCCACCACGAAAGCCAGCTAAAGATTG TAATGGACCTTAAAACGCTTGATGTCGCCCATGCCATTAAAGAAACAACGAGGCACCACCACGAACAGACCAGCCAACTATGTGATGTTGTCGAGAAATG GAATGCACAGTTCGATAAGCTTGTGACGTATCAAAAGCAATACATCAATTGTCTCAATAGCTGGTTAAAGCTAAACCTCATCCCCATAGAAAGCAGCTTG AAAGAGAAGATATCATCCCCGCAACGAGTCGTGAATCCCCCAATCCAACCCCTTCTTCATGCATGGCACGACCATCTCGAAAGGCTACCAGACGAGCTTG CCAAAACTGCAATCTCTTCTTTCGAGGCCGTGATCAGAACCATTAAAGTACACCAAGAAGAAGAGATGAAGCTAAAGGAGAGATGTGAAGAAACTAGAAA GGAGTATGATTGA
AA sequence Show only first row Show all	>Lus10002864 pacid=23181310 polypeptide=Lus10002864 locus=Lus10002864.g ID=Lus10002864.BGIv1.0 annot-version=v1.0 MEKEAEMTWIPRITKLMPLFWISCWPGKRNSLMKSSLTEQQGELMKLEYKRKVALLNKQKKRGASADSLEKTKAAVSHLHTGYIVDMQSMDSTVAEVNHI RDNQLYPKLVALVQGMSKMWGNMSIHHESQLKIVMDLKTLDVAHAIKETTRHHHEQTSQLCDVVEKWNAQFDKLVTYQKQYINCLNSWLKLNLIPIESSL KEKISSPQRVVNPPIQPLLHAWHDHLERLPDELAKTAISSFEAVIRTIKVHQEEEMKLKERCEETRKEYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25590			Protein of unknown function (D...		Lus10002864 [exp]	0	1
AT5G25590			Protein of unknown function (D...		Lus10000014 [exp]	1.0	0.9715
AT5G25590			Protein of unknown function (D...		Lus10038627 [exp]	1.4	0.9418
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10038181 [exp]	2.4	0.8714
AT2G45250			Integral membrane protein hemo...		Lus10003319 [exp]	12.4	0.8242
AT3G50780			unknown protein		Lus10016789 [exp]	12.8	0.7833
AT5G08630			DDT domain-containing protein ...		Lus10039626 [exp]	14.1	0.7977
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	16.5	0.8316
AT5G56810			F-box/RNI-like/FBD-like domain...		Lus10026195 [exp]	17.9	0.8109
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10019703 [exp]	20.1	0.8166
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10016416 [exp]	21.0	0.8325

Compare expression of checked genes

Lus10002864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.