Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01600 329 / 1e-114 ATFER1 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) AT2G40300 320 / 8e-111 ATFER4 ferritin 4 (.1) AT3G11050 315 / 3e-109 ATFER2 ferritin 2 (.1) AT3G56090 305 / 4e-105 ATFER3 ferritin 3 (.1) AT3G61010 100 / 4e-24 Ferritin/ribonucleotide reductase-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012233 [exp] 479 / 7e-174 AT5G01600 333 / 4e-116 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Lus10022673 [exp] 404 / 4e-144 AT5G01600 339 / 1e-118 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Lus10012499 [exp] 394 / 2e-140 AT5G01600 338 / 3e-118 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Lus10007523 [exp] 328 / 4e-114 AT2G40300 360 / 4e-127 ferritin 4 (.1) Lus10017433 [exp] 323 / 2e-112 AT2G40300 366 / 3e-129 ferritin 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G103900 [exp] 362 / 1e-127 AT5G01600 262 / 3e-88 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Potri.016G124700 [exp] 359 / 1e-126 AT5G01600 294 / 8e-101 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Potri.016G124900 [exp] 348 / 4e-122 AT5G01600 264 / 4e-89 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1) Potri.008G072700 [exp] 336 / 2e-117 AT3G11050 330 / 9e-115 ferritin 2 (.1) Potri.010G184500 [exp] 333 / 3e-116 AT3G11050 311 / 2e-107 ferritin 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF00210 [flax] [poplar] Ferritin Ferritin-like domain
Representative CDS sequence Show only first row Show all	>Lus10002865 pacid=23181323 polypeptide=Lus10002865 locus=Lus10002865.g ID=Lus10002865.BGIv1.0 annot-version=v1.0 ATGTTTCTGAGAACTTCTCCGAGCTTCTCCATCATCGCCAAGCACGGCGACAGCTTGTTCGCCGGCCACGGCAGCTTCAGTGCTGCTGCTTCTCCGATTT CAGCTCAGGGAATGGAGAAGAGGAGTAGCTCTCTGGTGGCTTGTGCTGCCGTCGGCGAAGTCAACTCGGCGCTGACTGGTATCGTGTTCAAGCCGTTTGA GGAAGTGAAGCGGGAAGAGTTTATGGTCCCGATCTCTCCACAGGTTTCGATCGCTCGTCAGCTGTACGTTGATGAGTGCGAATCTGCGATCAACGAGCAG ATCAATGTGGAGTACAATGCTTCGTACATATACCATTCCCTGTATGCGTACTTTGACAGGGATAACGTTGCTCTCAAAGGCTTTGCTAATTTTTTCAAGG AATCTAGTGAAGAAGAAAGGGGACATGCTGAAAAGCTGATGGAATATCAGAATGTTCGTGGAGGGAGAGTGAAACTACATTCTATTCTGATGCCTCCTTC TGAATTCGAGCATGTCGAGAAGGGAGATGCTTTGTACGCCATGGAACTGGCGCTGTCCCTGGAGAAACTGGTGAATGAGAAGCTTCTAAGCTTACACTCT GTGGCAACCAAGAACAACGACCCACAAATGGCTGAATTCGTCGAAATAGAGTACCTTAACGAACAGGTGGAAGCCATCAAGAAAATATCAGACTACGTCA CCCAGTTGAGGCTCGTCGGCAAAGGCCACGGAGTTTGGCACTTTGACCAGATGCTTCTCAACGAAGCTTGA
AA sequence Show only first row Show all	>Lus10002865 pacid=23181323 polypeptide=Lus10002865 locus=Lus10002865.g ID=Lus10002865.BGIv1.0 annot-version=v1.0 MFLRTSPSFSIIAKHGDSLFAGHGSFSAAASPISAQGMEKRSSSLVACAAVGEVNSALTGIVFKPFEEVKREEFMVPISPQVSIARQLYVDECESAINEQ INVEYNASYIYHSLYAYFDRDNVALKGFANFFKESSEEERGHAEKLMEYQNVRGGRVKLHSILMPPSEFEHVEKGDALYAMELALSLEKLVNEKLLSLHS VATKNNDPQMAEFVEIEYLNEQVEAIKKISDYVTQLRLVGKGHGVWHFDQMLLNEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10002865 [exp]	0	1
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10022673 [exp]	1.0	0.9315
AT3G20680			Domain of unknown function (DU...		Lus10006345 [exp]	3.5	0.8769
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10012499 [exp]	4.2	0.8595
AT2G38860		YLS5	Class I glutamine amidotransfe...		Lus10014721 [exp]	4.5	0.8555
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Lus10031394 [exp]	6.6	0.8166
AT5G04000			unknown protein		Lus10018038 [exp]	6.9	0.8303
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10000632 [exp]	10.6	0.8371
AT3G16190			Isochorismatase family protein...		Lus10006833 [exp]	11.6	0.8263
AT3G13845			unknown protein		Lus10015617 [exp]	14.5	0.7993
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	14.7	0.8398

Compare expression of checked genes

Lus10002865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.