Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30825 223 / 1e-71 DIS2, ARPC2, ARPC2A DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) AT2G33385 138 / 5e-38 ARPC2B actin-related protein C2B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008071 [exp] 309 / 3e-105 AT1G30825 456 / 6e-163 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) Lus10023737 [exp] 141 / 3e-39 AT2G33385 397 / 1e-137 actin-related protein C2B (.1.2) Lus10011780 [exp] 138 / 2e-37 AT2G33385 228 / 9e-71 actin-related protein C2B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G157700 [exp] 243 / 2e-79 AT1G30825 429 / 5e-152 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) Potri.001G073300 [exp] 239 / 1e-77 AT1G30825 449 / 1e-159 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) Potri.010G067100 [exp] 142 / 8e-40 AT2G33385 410 / 5e-143 actin-related protein C2B (.1.2) Potri.008G170800 [exp] 139 / 3e-38 AT2G33385 410 / 2e-142 actin-related protein C2B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04045 [flax] [poplar] P34-Arc Arp2/3 complex, 34 kD subunit p34-Arc
Representative CDS sequence Show only first row Show all	>Lus10002867 pacid=23182662 polypeptide=Lus10002867 locus=Lus10002867.g ID=Lus10002867.BGIv1.0 annot-version=v1.0 ATGGGGCAAGGGAAGGGATATAACTCAGCGGTAGAGTGTCAACTTGACGTGGCGGAAGTCATCAGTTCGAGCCTGATTATCCCTACACCCAATGCTGAAA GGGTCACTGTAGTATATCCTATGAGATTCAGTGACTCTGTTGATACTACATATGCAGCTTCTTTCCTGCAGGAATTTGTGGAAACAAGACGTACTGCAGG ACTTACCAGTGCTCCTGTATGTTCCTGGTCTCCAGACCCTCCCCCAGAACTAAAAGAAACTTCTATTGAAGCATTATCTGCAAATGCTGGATTTGTATCC TTTGTTATTTATCCACGTCACGTGGAGGGCAGAAAGTTGGATAAGACAGTGTGGAACCTGTCAACGTTTCATGCATATGTTAGTTATCATGTTAAGTGCA CGGAGGCTTTCATGCATACACGGATGCGGAGGCGTGTTGAGGGTATGATAGAGGCCTTAGATCAAGCAAAACCAGTGGCCGAGGATAAAGAAAAATCTCT GAATAGCAGATCTTTTAAAAGGCTGGTAGGTTTTGTTATGGAGCATCAAAGAAGGCAGGACGAATGCAAAATCATAGGAACTGGTGGCCGCAGCATCTGT AGTCTGAAGCAATGCAACTTGCCATCCACCATGTCGAGAGGAACCAGGGTACTGCTTGGTTGTTTCTTCCCTGCGAGAGAAATGGTGGGGCTTACCCTCT CACGAGTAGGGGAAAAGGATGAGCTACTGTCACCATCGTCTCACGACATCTCTCTCCTTCCTCCTTGTCTCATCTTGCCTGGCCAAGCTAATGACTCAGT TTGTTGTCGACCGCGGTGCATTGTCACGGCGATTGAAGTGTCCTCGTTGCTGTCTAGAGAGAGGAAACCATAA
AA sequence Show only first row Show all	>Lus10002867 pacid=23182662 polypeptide=Lus10002867 locus=Lus10002867.g ID=Lus10002867.BGIv1.0 annot-version=v1.0 MGQGKGYNSAVECQLDVAEVISSSLIIPTPNAERVTVVYPMRFSDSVDTTYAASFLQEFVETRRTAGLTSAPVCSWSPDPPPELKETSIEALSANAGFVS FVIYPRHVEGRKLDKTVWNLSTFHAYVSYHVKCTEAFMHTRMRRRVEGMIEALDQAKPVAEDKEKSLNSRSFKRLVGFVMEHQRRQDECKIIGTGGRSIC SLKQCNLPSTMSRGTRVLLGCFFPAREMVGLTLSRVGEKDELLSPSSHDISLLPPCLILPGQANDSVCCRPRCIVTAIEVSSLLSRERKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Lus10002867 [exp]	0	1
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10033519 [exp]	2.2	0.8252
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10000203 [exp]	6.0	0.8075
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005740 [exp]	11.4	0.8160
					Lus10022574 [exp]	12.6	0.7820
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10036231 [exp]	13.0	0.7630
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10034528 [exp]	15.5	0.8021
					Lus10039764 [exp]	17.0	0.7995
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10005776 [exp]	17.5	0.7414
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10027223 [exp]	20.0	0.7974
AT4G25150			HAD superfamily, subfamily III...		Lus10006849 [exp]	20.3	0.8325

Compare expression of checked genes

Lus10002867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.