Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02500 778 / 0 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) AT3G62720 764 / 0 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) AT1G74380 533 / 0 XXT5 xyloglucan xylosyltransferase 5 (.1) AT5G07720 528 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT1G18690 503 / 5e-176 Galactosyl transferase GMA12/MNN10 family protein (.1) AT2G22900 293 / 1e-94 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G37690 290 / 5e-94 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G38310 107 / 5e-28 Galactosyl transferase GMA12/MNN10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037519 [exp] 929 / 0 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037516 [exp] 927 / 0 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037514 [exp] 743 / 0 AT3G62720 615 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Lus10019076 [exp] 536 / 0 AT5G07720 744 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10015721 [exp] 531 / 0 AT5G07720 741 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10021631 [exp] 529 / 0 AT5G07720 766 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10000563 [exp] 523 / 0 AT5G07720 759 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10037520 [exp] 465 / 1e-165 AT4G02500 449 / 3e-159 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10011550 [exp] 313 / 2e-102 AT2G22900 571 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G208000 [exp] 813 / 0 AT4G02500 773 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025300 [exp] 804 / 0 AT4G02500 775 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025100 [exp] 669 / 0 AT3G62720 674 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Potri.015G061800 [exp] 537 / 0 AT5G07720 730 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.012G068300 [exp] 532 / 0 AT5G07720 755 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.007G005900 [exp] 300 / 3e-97 AT2G22900 593 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.014G006100 [exp] 292 / 2e-94 AT2G22900 592 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.010G025400 [exp] 69 / 3e-14 AT4G02500 68 / 8e-15 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF05637 [flax] [poplar] Glyco_transf_34 galactosyl transferase GMA12/MNN10 family
Representative CDS sequence Show only first row Show all	>Lus10002870 pacid=23176882 polypeptide=Lus10002870 locus=Lus10002870.g ID=Lus10002870.BGIv1.0 annot-version=v1.0 ATGCTAGAACGGTGCCTCGGCCCTCAGCGGGTCCGCCGGATCGAAAGAGCTGCCCGGCAAGCCAACGTCACCGTCCTATGCCTATTCATGACCGTCCTCG TCCTACGTGGCTTGTTCGGCGCCGGAAAGGACGGAACTCCGGCCCAGGACATCGAGGATCTGACGAGCCACTTCTACGCTTCCCGGAAGCACGCCGAGCC TCACCGCGTGCTCGTGGAAGCGCAGCCGGAGAACGAGGCCAAGACCGAAGACCCGAAGAATTATGCGACGTTCGACGTCAGCAAGATTATGGTGGACGAA GGCGAGGACGAGAAGCCCGATCCGAACAAGCCGTACACCTTGGGCCACAAGATTTCCGAGTGGGACGATCAGCGAGCCGATTGGCTGAGAAAGAACCCTA ATTTCCCCAATTTCATTAGAGAGAACAAGCCCCGGGTGCTCCTGGTCACCGGATCTTCTCCCAAGCCGTGCGAGAATCCAGTTGGCGACCATTACTTGTT GAAAGCGATCAAGAACAAGATCGATTATTGCAGGCTTCACGGGATCGAAATCTTCTACAACATGGCGCTGTTAGATGCTGAAATGGCCGGTTTCTGGGCG AAGCTGCCGTTGATTAGGAAGCTACTGTTGTCTCATCCGGAGATTGAGTTCCTTTGGTGGATGGATAGTGATGCCATGTTTACAGATATGGCATTTGAAT TGCCTTGGGAGAGGTATAAGGACGTCAATCTGGTGATGCACGGTTGGAACGAGATGGTTTACGATCAGAAGAACTGGATTGGGCTGAACACTGGAAGCTT TCTGCTGAGGAACGGCCAATGGGCATTGGATCTTCTGGACGCGTGGGCGCCAATGGGACCGAAAGGGAAGATTAGAGATGAAGCTGGGCAAGTACTCACT CGGGAGCTGAAAGACAGACCTGTTTTCGAAGCTGACGATCAATCTGCCATGGTTTATCTATTGGCTACACAGAGGGAAATGTGGGGGGAGAAGGTGTATC TAGAGAGCGCTTACTATTTGCACGGTTACTGGGGGATATTGGTGGACCGGTATGAGGAAATGATCGAGAATTATCATCCGGGACTGGGCGATCATCGGTG GCCGTTGGTTACTCATTTCGTGGGTTGCAAACCTTGCGGGAAGTTCGGTGATTACCCAGTGGAAAGATGCTTGAAGCAAATGGATCGAGCTTTCAACTTT GGTGACAACCAAATTCTGCAGATTTATGGGTTCACACACAAAACTTTGGCTAGTAGGAGAGTTAAGCGGGTTAGAAACGAGACGAGCAATCCACTGGAAG CTAAAGACGAGCTTGGGTTGCTTCATCCTGCTTTCAAAGCTGTCAAAGTATCGTCTTGA
AA sequence Show only first row Show all	>Lus10002870 pacid=23176882 polypeptide=Lus10002870 locus=Lus10002870.g ID=Lus10002870.BGIv1.0 annot-version=v1.0 MLERCLGPQRVRRIERAARQANVTVLCLFMTVLVLRGLFGAGKDGTPAQDIEDLTSHFYASRKHAEPHRVLVEAQPENEAKTEDPKNYATFDVSKIMVDE GEDEKPDPNKPYTLGHKISEWDDQRADWLRKNPNFPNFIRENKPRVLLVTGSSPKPCENPVGDHYLLKAIKNKIDYCRLHGIEIFYNMALLDAEMAGFWA KLPLIRKLLLSHPEIEFLWWMDSDAMFTDMAFELPWERYKDVNLVMHGWNEMVYDQKNWIGLNTGSFLLRNGQWALDLLDAWAPMGPKGKIRDEAGQVLT RELKDRPVFEADDQSAMVYLLATQREMWGEKVYLESAYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNF GDNQILQIYGFTHKTLASRRVKRVRNETSNPLEAKDELGLLHPAFKAVKVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10002870 [exp]	0	1
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10027484 [exp]	1.7	0.8942
AT3G49720			unknown protein		Lus10019279 [exp]	4.6	0.8865
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10010594 [exp]	5.3	0.8898
AT1G70590			F-box family protein (.1)		Lus10026694 [exp]	8.3	0.8492
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Lus10023355 [exp]	8.8	0.8731
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037516 [exp]	14.5	0.8694
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10039239 [exp]	15.2	0.8736
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10004712 [exp]	16.0	0.8515
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10027539 [exp]	16.4	0.8828
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10027386 [exp]	16.9	0.8493

Compare expression of checked genes

Lus10002870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.