Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79490 1253 / 0 EMB2217 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18900 178 / 2e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT1G74750 169 / 3e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 145 / 1e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02150 141 / 2e-34 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20090 139 / 6e-34 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 138 / 1e-33 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06710 137 / 6e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59900 136 / 1e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 136 / 1e-32 PGR3 proton gradient regulation 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037515 [exp] 1618 / 0 AT1G79490 1296 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037517 [exp] 1583 / 0 AT1G79490 1299 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033110 [exp] 173 / 1e-44 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10003424 [exp] 150 / 7e-37 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10001633 [exp] 139 / 2e-34 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 140 / 9e-34 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026884 [exp] 138 / 1e-33 AT4G31850 746 / 0.0 proton gradient regulation 3 (.1) Lus10026558 [exp] 138 / 3e-33 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 135 / 2e-32 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G173400 [exp] 1314 / 0 AT1G79490 1295 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G066400 [exp] 171 / 5e-44 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Potri.001G180000 [exp] 152 / 3e-38 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G264800 [exp] 150 / 5e-37 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.010G014100 [exp] 144 / 4e-35 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G124900 [exp] 140 / 6e-34 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 138 / 1e-33 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 135 / 2e-33 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 137 / 5e-33 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G130600 [exp] 134 / 5e-33 AT1G12700 330 / 3e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10002871 pacid=23176884 polypeptide=Lus10002871 locus=Lus10002871.g ID=Lus10002871.BGIv1.0 annot-version=v1.0 ATGAAGCGAGTTAGGGTTTCGGTTTCAATGTTTCATCGCAGCCGATTCTACCATCAGGCCCCTAATCTCCATTCTTTTTCCTACGACCGGTGTCTCACTT CTATTTCCCGACTTCTGTTTCACAATCTTGTCCCTCATCCTGCATCATCAGCTGCAACTATCCGAGACTCCAACTTCGCGAGGAAGTTCTGTTCAGGGGC GAGAAGCAAAGGTACATGGACGGAGGAGGAAATAGAGTATTTGGATGAGTCCGGCAGTCTCATTTACTCCGGTAAAGGAGTGAGATCAGTGGAACCTGGA CTAGATGACCATGTCATGATTGGTGATCTTAAAAAGCCTATCCTAAACGCTTCTGCGGTTGCCAAGATGGTTGAAGTTGCAAAGAGATGGAGATGGGGTC CTGAACTGGAAACTCAACTGGACAATCTGCAATTCGTTCCCAACATGACACATGTTGTGCAAGCTATGAAACTCATTGATGATTCTGGTGCGTTGTTGAG TTTGTTTAAATGGTCCAAGAGGCAGTCATGGTATTCTCCCAGCGATGAGTGTTATGTCATCTTGTTCGATGGGCTTAATCGAAGCAGAGATTTCGATGGC ATTCAGAGTTTGTTCGATGACATGGTTCAAGATTCAAGTACGACTAATTCGTTTGGGGCACACAATAGAGTAATCCAGTATTTGGCCAAGGCAGAGAAGC TGGAAGTGTCCTTCTCTTGTTTCAAGAAAATTCATGATTCGGGATGTGAGATCGATACGCAGACTTATAACGTGCTTATTACATTGTTTCTTAACAAGGG TTTGCCGTACAAGGCTTTTGAGATATATGAGAGCATGGAAGCAGCGAATGCTTCATTGGATAGGTCAACCTACGAGATGATGGTGCCAAGCTTGGCAAAA TCAGGGAGGCTTGATGCAGCTTATCAGCTCTATCAACATATGAAGGAAAAGAAAATCCAACCAAGCTTTGGGATCTTCTCCGCGCTTGTTGATTCCATGG GGAAAGCTGGTAGGCTAGACACATCCTTGAAAATTTACATGGAAATGCAAGGTTTTGGACTCAGGCCATCTGCCACCATGTATGTTTCCTTGGTAGAATC ATACACCAAGGCCGGGAAGCTAGATAAAGCGCTGAGGCTGTGGGATGAGATGAAGTTGACTGGCTTCAGGCCTAACTTTGGCTTGTATACATTAATCATC GAATCCCACGCAAAGTCTGGGAAGCTCGACATTGCAATGTCCATCTTCAGCGATATGGAAAAGGCTGGATTTTTACCAACCCCATCAACCTATTCGTGTC TTCTGGAGATGCATGCTGCTTCTGGACAAGTCGACTCTGCTATGAAGCTGTATCACTCCATGACTAGTGCGGGTTTGAAACCAGGTTTAAGTACCTATAC TTCCCTTTTGACCCTTTTAGCTAATAAAAAGCTTGTAGATGTAGCTGCCAAAATCTTACTGGAAATGAAGACGATGGGCTTTTCCGTTGATGTTAGTGCC AGTGATGTTCTAATGGTGTATATACGAGATGGTTCGGTTGATCTTGCTCTGAGGTGGCTACGTTTCATGGGTTCATCCGGGGTTCGAACAAATAACTTTA TAATTAGGCAGCTGTTTGAGTCATGCATGAAGAATGGCTTGTATGAACAGGCCAAGCCTCTTTTAGAAACTTACATAAACTCTGCAGCTAAAGTTGATTT GATACGCTATACATCCATACTTGCCCATCTCGTCAGGTGCCAAGACGAGCATAAAGAGAGGCACTTGATGTCAATCCTCGGTAGCACGAGGCATAAGGCG CATGAGTTTTTGTGCGGGCTTTTCACCGGTCCGGAGCAGAGGGAACAGCCGGTGCTGTCCTTTGTGAGGGAGTTCTTCCAGGGAATAGATTATGAGTTAG AGGAAGGAGCTGCAAGGTACTTTGTGAATGTTCTTCTGAATTACTTAGTTCTGATGGGACAAATAAACCGGGCGAGATGTGTGTGGAAAGTATCATACGA GAACAAACTGTTCCCAAAGGCGATTGTGTTCGATCAACACATTGCTTGGTCCCTTGATGTGAGGAATCTTTCAGTGGGGGCTGCTTTGATTGCAGTTGTG CACACGCTTCACAGGTTTAGAAAGAGGATGTTGTACTATGGGGTGATACCGAGACGGATAAAATTGGTGACGGGGCCGACGCTGAAGATTGTGGTGGCGC AGATGCTTAGTGGGTTGGAGTCACCGTTTGAGGTGAGTAAAGTGGTGCTGAGAGCGCCGGGGGAAGGGGTGATGGAGTGGTTTAAGAAGCCTATTGTACA GCAGTTTTTAGTGAACGAGATTCCATCAAGTGCTGATATACTAATGCATAAACTCAACATACTTTTCCCGAGTTCTGCACCTGAGATCAGATCGCTCTCT CCTCCCAAACCACTTATGTCTGTTGCTATGGGGAAGACTATGTAA
AA sequence Show only first row Show all	>Lus10002871 pacid=23176884 polypeptide=Lus10002871 locus=Lus10002871.g ID=Lus10002871.BGIv1.0 annot-version=v1.0 MKRVRVSVSMFHRSRFYHQAPNLHSFSYDRCLTSISRLLFHNLVPHPASSAATIRDSNFARKFCSGARSKGTWTEEEIEYLDESGSLIYSGKGVRSVEPG LDDHVMIGDLKKPILNASAVAKMVEVAKRWRWGPELETQLDNLQFVPNMTHVVQAMKLIDDSGALLSLFKWSKRQSWYSPSDECYVILFDGLNRSRDFDG IQSLFDDMVQDSSTTNSFGAHNRVIQYLAKAEKLEVSFSCFKKIHDSGCEIDTQTYNVLITLFLNKGLPYKAFEIYESMEAANASLDRSTYEMMVPSLAK SGRLDAAYQLYQHMKEKKIQPSFGIFSALVDSMGKAGRLDTSLKIYMEMQGFGLRPSATMYVSLVESYTKAGKLDKALRLWDEMKLTGFRPNFGLYTLII ESHAKSGKLDIAMSIFSDMEKAGFLPTPSTYSCLLEMHAASGQVDSAMKLYHSMTSAGLKPGLSTYTSLLTLLANKKLVDVAAKILLEMKTMGFSVDVSA SDVLMVYIRDGSVDLALRWLRFMGSSGVRTNNFIIRQLFESCMKNGLYEQAKPLLETYINSAAKVDLIRYTSILAHLVRCQDEHKERHLMSILGSTRHKA HEFLCGLFTGPEQREQPVLSFVREFFQGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVSYENKLFPKAIVFDQHIAWSLDVRNLSVGAALIAVV HTLHRFRKRMLYYGVIPRRIKLVTGPTLKIVVAQMLSGLESPFEVSKVVLRAPGEGVMEWFKKPIVQQFLVNEIPSSADILMHKLNILFPSSAPEIRSLS PPKPLMSVAMGKTM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10002871 [exp]	0	1
AT5G18475			Pentatricopeptide repeat (PPR)...		Lus10005540 [exp]	1.7	0.7822
AT5G53280		PDV1	plastid division1 (.1)		Lus10039325 [exp]	2.0	0.7747
AT4G38150			Pentatricopeptide repeat (PPR)...		Lus10013853 [exp]	14.7	0.6622
AT5G53280		PDV1	plastid division1 (.1)		Lus10027574 [exp]	15.2	0.6583
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10043008 [exp]	38.5	0.6331
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009673 [exp]	47.3	0.6409
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10030140 [exp]	57.4	0.6582
AT5G54470	CO		B-box type zinc finger family ...		Lus10039727 [exp]	72.7	0.6608
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000484 [exp]	84.9	0.6327
AT5G08040		TOM5	mitochondrial import receptor ...		Lus10034683 [exp]	88.0	0.6101

Compare expression of checked genes

Lus10002871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.