Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22260 417 / 3e-144 IM1, IM IMMUTANS, Alternative oxidase family protein (.1) AT5G64210 74 / 5e-14 AOX2 alternative oxidase 2 (.1) AT3G22370 65 / 4e-11 AtHSR3, ATAOX1A, AOX1A hyper-sensitivity-related 3, alternative oxidase 1A (.1) AT1G32350 64 / 6e-11 AOX1D alternative oxidase 1D (.1) AT3G27620 62 / 3e-10 AOX1C alternative oxidase 1C (.1) AT3G22360 61 / 8e-10 AOX1B alternative oxidase 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037518 [exp] 398 / 7e-138 AT4G22260 273 / 1e-90 IMMUTANS, Alternative oxidase family protein (.1) Lus10005372 [exp] 75 / 2e-14 AT5G64210 453 / 2e-160 alternative oxidase 2 (.1) Lus10020523 [exp] 73 / 7e-14 AT5G64210 462 / 4e-164 alternative oxidase 2 (.1) Lus10035670 [exp] 61 / 8e-10 AT3G22370 519 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G021800 [exp] 432 / 4e-150 AT4G22260 457 / 7e-162 IMMUTANS, Alternative oxidase family protein (.1) Potri.004G002600 [exp] 420 / 3e-145 AT4G22260 424 / 6e-149 IMMUTANS, Alternative oxidase family protein (.1) Potri.012G001600 [exp] 69 / 1e-12 AT3G22370 475 / 4e-169 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.012G001500 [exp] 66 / 1e-11 AT3G22370 518 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.015G019800 [exp] 62 / 2e-10 AT3G22370 526 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.003G103900 [exp] 60 / 1e-09 AT1G32350 433 / 1e-153 alternative oxidase 1D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF01786 [flax] [poplar] AOX Alternative oxidase
Representative CDS sequence Show only first row Show all	>Lus10002872 pacid=23176876 polypeptide=Lus10002872 locus=Lus10002872.g ID=Lus10002872.BGIv1.0 annot-version=v1.0 ATGGCGGTGACGGCGAAGATTCGGCAGCAACGACGGCTGTCCGGCGCACACTCCGGCGACGCTCCGGTGTGGCGATGTTTGGCAACTCCTTTTCTTTTCT ACTTTTCTTCGCTGCCGGCGCTCACCAGCCCCACGTCATCAACGACTTGCCGATCCATCCATCAACGCTCGTTACCGGAGCTCCCAATCAGCTCCAATTC CAGAGCCTCTAACTTGTGTTCATCTGTTGCCGCTTCTCTTCACAGGCTCTGCCGGCGATCTTTGCCTCTTGTGGATTCGTCCTCTTCTTCGGCTTCGCTT CACCCCAAGGCAATTTTTTTTTCTCTGCGAGTAAACCGTGTTGCAATGGCAGTGACTGCTTGTTCTGCTGTACATGCGACCCTGCCGGCAATTAGCAAAG CTTCTAGTTCTCTCAACACCCGAAACAACTCTTTGCGTTACCACCTCCGTAGTCTAGCTTCATGCCGTCCATCTCTTTCAAGGAAATTTTATAAAACTCA AGCAACTGTGGTTCGTGAACCGGAGGAAAAAGTGGTGGTAGAGCAAACCTTTCAACCCAAGACTACCTTTGATCAGCGGGAAAGCCGTGGCAGTGGCGGC TCAGAGAAGGACCCTCCTCAATCTGCTTTTGACCATTCGATTATCAAGATTGAGCAATCCATTAATGTCTTTCTTACGGATACAGTGATAAAGATTCTCG ACACATTCTACCACGATCGAGATTATGCTAGGTTCTATGTTCTTGAAACCATCGCAAGGGTTCCCTATTTTGCCTTTATTTCAGTTCTGCACTTGTATGA GAGTGTTGGTTGGTGGAGAAGAGCAGATTATATAAAAGTACATTTTGCTGAGAGTTGGAATGAGATGCACCACTTACTTATCATGGAAGAACTTGGTGGT AACAGTTGGTGGTTTGACCGATTTCTTGCTCAACATGTTGCAGTATTTTACTATTTTATGACTGTGTTTATGTATGCACTGAGTCCAAGAATGGCGTATC ACTTTTCCGAGTGCGTGGAGAATCATGCCTTTTCAACCTATGATAAATTTATCAAAGCGCATGAAGATGAGCTAAAGCAATTACCTGCTCCTGAGATTGC AGTGAGATACTACACTGGGGATGACTTGTACTTATTTGATGAATTCCAGACATCCAGAGTCCCTAATACACGGAGGCCGAAAATAGATACATTATACGAC ACGTTTGTGAATATTAGAGAAGATGAGGGTGAACACTGCAAGACTATGAAGGCATGTCAAACTCCTGGTAATCTGCGTTCTCCTCATTCATATCCAGAAG AAGCTGCCGATGAGGAATCATCTTCGGGATGCGTGGTCTCCGAAGAAGCGGAGTGCCAAGGCATTGTTGACTGCGTAAAGAAATCTGTTAGTCCTGGTGT TACAAAGCAAAAGCAAGGAGTTTAA
AA sequence Show only first row Show all	>Lus10002872 pacid=23176876 polypeptide=Lus10002872 locus=Lus10002872.g ID=Lus10002872.BGIv1.0 annot-version=v1.0 MAVTAKIRQQRRLSGAHSGDAPVWRCLATPFLFYFSSLPALTSPTSSTTCRSIHQRSLPELPISSNSRASNLCSSVAASLHRLCRRSLPLVDSSSSSASL HPKAIFFSLRVNRVAMAVTACSAVHATLPAISKASSSLNTRNNSLRYHLRSLASCRPSLSRKFYKTQATVVREPEEKVVVEQTFQPKTTFDQRESRGSGG SEKDPPQSAFDHSIIKIEQSINVFLTDTVIKILDTFYHDRDYARFYVLETIARVPYFAFISVLHLYESVGWWRRADYIKVHFAESWNEMHHLLIMEELGG NSWWFDRFLAQHVAVFYYFMTVFMYALSPRMAYHFSECVENHAFSTYDKFIKAHEDELKQLPAPEIAVRYYTGDDLYLFDEFQTSRVPNTRRPKIDTLYD TFVNIREDEGEHCKTMKACQTPGNLRSPHSYPEEAADEESSSGCVVSEEAECQGIVDCVKKSVSPGVTKQKQGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10002872 [exp]	0	1
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	5.6	0.8549
AT5G61670			unknown protein		Lus10016713 [exp]	6.0	0.8448
AT4G19390			Uncharacterised protein family...		Lus10037258 [exp]	7.4	0.7782
AT3G26890			unknown protein		Lus10035170 [exp]	8.1	0.8267
AT1G55000			peptidoglycan-binding LysM dom...		Lus10004477 [exp]	11.4	0.8106
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10016791 [exp]	13.6	0.7900
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10018834 [exp]	13.7	0.7863
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10023517 [exp]	17.0	0.7766
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	17.8	0.8136
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10037518 [exp]	18.0	0.8005

Compare expression of checked genes

Lus10002872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.