Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15840 725 / 0 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002874 [exp] 1491 / 0 AT4G15840 947 / 0.0 BTB/POZ domain-containing protein (.1) Lus10037522 [exp] 1473 / 0 AT4G15840 944 / 0.0 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014000 [exp] 1058 / 0 AT4G15840 1028 / 0.0 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10002873 pacid=23176887 polypeptide=Lus10002873 locus=Lus10002873.g ID=Lus10002873.BGIv1.0 annot-version=v1.0 ATGGAACCCCAATACCCTAGCATCGGCAGGCCTCGCTCCTTCGGGCAAGTGAAAGTGACGATTCAGCCATCCTCCACCCCACAGCAGCACTCCTCCGACA GTGACCGCACCAATACTGACCTCCGGGCCTTGGATTGTAATCTCAATTCTCTCTGCGATCACATTCAGATGGAAGGTTTCAATTCCGGTTCCTTCTCCGA TGTTGTTGTTCATGCTATGGGCTCTACCTATCGCCTCCACCGCCTTATCCTCTGTCGCAGCTCTTACTTCAGGAACATGCTACATGGTCCTTGGAAAGAA GCAACTTCTCCTGTTGTGAACTTGAATGTAGATGATAAGAATGTGAACGCTGACGCAATTGAGACGGCCTTGGCTTATTTGTATGGGCATCATCCCAAAC TTGATGATAACAATGCATTCCGTGTCCTGGCAGCTGCTTCTTTTCTTGACCTCCAGGACTTGTGTGCAATATGTACAGACTTCATTATCTCTGAACTCTG GAGTTCAAACTTCTTGGCTTATCAGGTATTTGCTGAGAGCCAAGATTATGGTGAATATGGAGAACGAGTAAGGAATGCTTGCTGGGGTTATCTTTGTCAA AGTGGATCCATGGAACTGAAGGAGGTTCTTCCGAAGCTTTCATCTCAAACTCTGCATGCATTGTTGACCTCAGATGAATTGTGGGTAGTTAGTGAAGAGA AACGGTTTGAGCTGGCACTGTACACCCTTCTATCAAAAAGAGCTTTTTCCAAGAGGGAAAGTTCTGACGGTGGCACCTCCGTGTCTGAAATGTGTGTTAG TATGCATAGTGATTCTTCCCAAATGAAAGGCAAAGAATTGATTGATAACGCTAAGACTGGTTTAGGACGGTTAAGTTTAAAAGATGACCTAGAAGGTCAG GCTATGGCACATAATCTTCTCGTTGATCTTGTTGAGTGTGAAGTCGACTATCGAGGGCCACAAGTTTCGTATTCACATTCTAATGTGGGAATGGGATCCT TGCACTCGTGCAGCATGACACAATCATCTCCCATGAGTAACTCATTTTCACAAATAAATGGAAATACAAACTCGTGCTCTTATGTTGAAATGCCCATTGG CACAAGTGGACTGGCAGCTAGTGAATTTGCCGTGGAGGGTCCTTCTGGGGAAACCTCCTACCAATTGAACAAAAACAATTGGCTTGGAAGTGACCAATCT GGGAATAGCCCTTCAGCAGATCCTTCTTGCAGTGGGCTTATGGTTAATGATTGGGGAAGATGTGACATGAATTCCCTCTCATGGGGTGGAAGAGTCGTGG GGAAAAGGCAGGTCAAGAGTTATGCTAAAGCAAACTGTGGTGTTCACGGAGAGGACTATGACACATTCGTGAACATATTTGAAGGGGGGTCTCTCTTGTA CTGCAACATGTCTTTTGAGGCACTCTTGAATGTGAGAAAACAACTTGAGGAGTTAGGTTTCCCATGTAAGGCTGTCAATGATGGTCTTTGGCTGCAGATG CTATTAAGCCAAAGAGTACAGGAAACGGGTGCCGACACATGTAAACTATGCTGCTTCACCAGCATGTCATGCACTTGCAGACAGCAATTTGGATTTTCAC GTCAAGAGCATGAGCATACCAATTGCCCAGTCAACATGGGAAATGTGTATGTTGCTGATTCTGCTCCAGGTGGCGGGAACAGCGTCTTTAGACCAGTTCG TGTTCATGTCAGGGGACCTGGTGATGGCCTTGCTGGCATTGGACGTGGAACTACGTTTGTGCCAGCAGCTGCGTGGCCCCCTACCCGTTTTGTCTTTTCA CGAGTGCCCTTCGGTATTGGCAATAGAAATGGCCAACAGCAGTCTCTTCCAAATGATGATTCAGAGAGTAGAACCGATCACACGGGGGACCTTTCTGGTG ATGGGTTAACTGCTCTAGTTGGTTTAAGCCAGGGAGGGGTCAGCACTTCTAATGTGCAGACTCAACATACAGAGAGAGGTTACGAGACAGATATGCAAGA GAGAATATCTTCTACTGCTCCAAGTACTAGTGGTATTGCTGTTCAGGTGCTAGATTCACCTGAGCAAGCCATCGGCATTGAATGGGAAAGTGAAAATGAT TCCTCCATATCATTGGACATAAATACACCTTTGAGCCATTTTCCTCCTTTCCGGTTTGGGGTTGAATTTGCGGATGTACTTCGTCTAAGCGATGGCCAAG TCAAGCATTCTCCTGAATTTTTCTATGCCGGCTCCCTGTGGAAGGTATCTAATTTACCCGTCTATCAAACGTTTATAGATCTTGCAAGGCTAACCTGTTT TGGCTTCTTTATGTTTCTTTTAGCTGCTAAGCCTATTATGATTCACCATCATCTTACAGATACAGGTTATACGCACCGTTTGAGGTGTGAAGAAAGGGAG GCAGCTGGTGAGCTGACTATGGAGTTCATTGTCGCCATAAGGATGGTAGCAATAACCCAAAATGAATAA
AA sequence Show only first row Show all	>Lus10002873 pacid=23176887 polypeptide=Lus10002873 locus=Lus10002873.g ID=Lus10002873.BGIv1.0 annot-version=v1.0 MEPQYPSIGRPRSFGQVKVTIQPSSTPQQHSSDSDRTNTDLRALDCNLNSLCDHIQMEGFNSGSFSDVVVHAMGSTYRLHRLILCRSSYFRNMLHGPWKE ATSPVVNLNVDDKNVNADAIETALAYLYGHHPKLDDNNAFRVLAAASFLDLQDLCAICTDFIISELWSSNFLAYQVFAESQDYGEYGERVRNACWGYLCQ SGSMELKEVLPKLSSQTLHALLTSDELWVVSEEKRFELALYTLLSKRAFSKRESSDGGTSVSEMCVSMHSDSSQMKGKELIDNAKTGLGRLSLKDDLEGQ AMAHNLLVDLVECEVDYRGPQVSYSHSNVGMGSLHSCSMTQSSPMSNSFSQINGNTNSCSYVEMPIGTSGLAASEFAVEGPSGETSYQLNKNNWLGSDQS GNSPSADPSCSGLMVNDWGRCDMNSLSWGGRVVGKRQVKSYAKANCGVHGEDYDTFVNIFEGGSLLYCNMSFEALLNVRKQLEELGFPCKAVNDGLWLQM LLSQRVQETGADTCKLCCFTSMSCTCRQQFGFSRQEHEHTNCPVNMGNVYVADSAPGGGNSVFRPVRVHVRGPGDGLAGIGRGTTFVPAAAWPPTRFVFS RVPFGIGNRNGQQQSLPNDDSESRTDHTGDLSGDGLTALVGLSQGGVSTSNVQTQHTERGYETDMQERISSTAPSTSGIAVQVLDSPEQAIGIEWESEND SSISLDINTPLSHFPPFRFGVEFADVLRLSDGQVKHSPEFFYAGSLWKVSNLPVYQTFIDLARLTCFGFFMFLLAAKPIMIHHHLTDTGYTHRLRCEERE AAGELTMEFIVAIRMVAITQNE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15840			BTB/POZ domain-containing prot...		Lus10002873 [exp]	0	1
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10022858 [exp]	2.2	0.8881
AT4G15840			BTB/POZ domain-containing prot...		Lus10002874 [exp]	2.4	0.8570
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001638 [exp]	9.6	0.8617
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10041690 [exp]	11.4	0.8816
AT5G58510			unknown protein		Lus10031851 [exp]	12.2	0.7924
AT2G42520			P-loop containing nucleoside t...		Lus10016207 [exp]	13.9	0.8242
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10025454 [exp]	15.0	0.8393
AT5G47490			RGPR-related (.1)		Lus10007471 [exp]	22.8	0.8675
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10028286 [exp]	23.0	0.8517
AT2G40130			Double Clp-N motif-containing ...		Lus10028282 [exp]	24.3	0.8361

Compare expression of checked genes

Lus10002873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.