Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15840 920 / 0 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037522 [exp] 1682 / 0 AT4G15840 944 / 0.0 BTB/POZ domain-containing protein (.1) Lus10002873 [exp] 1491 / 0 AT4G15840 753 / 0.0 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014000 [exp] 1249 / 0 AT4G15840 1028 / 0.0 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10002874 pacid=23176877 polypeptide=Lus10002874 locus=Lus10002874.g ID=Lus10002874.BGIv1.0 annot-version=v1.0 ATGGAACCCCAATACCCTAGCATCGGCAGGCCTCGCTCCTTCGGGCAAGTGAAAGTGACGATTCAGCCATCCTCCACCCCACAGCAGCACTCCTCCGACA GTGACCGCACCAATACTGACCTCCGGGCCTTGGATTGTAATCTCAATTCTCTCTGCGATCACATTCAGATGGAAGGTTTCAATTCCGGTTCCTTCTCCGA TGTTGTTGTTCATGCTATGGGCTCTACCTATCGCCTCCACCGCCTTATCCTCTGTCGCAGCTCTTACTTCAGGAACATGCTACATGGTCCTTGGAAAGAA GCAACTTCTCCTGTTGTGAACTTGAATGTAGATGATAAGAATGTGAACGCTGACGCAATTGAGACGGCCTTGGCTTATTTGTATGGGCATCATCCCAAAC TTGATGATAACAATGCATTCCGTGTCCTGGCAGCTGCTTCTTTTCTTGACCTCCAGGACTTGTGTGCAATATGTACAGACTTCATTATCTCTGAACTCTG GAGTTCAAACTTCTTGGCTTATCAGGTATTTGCTGAGAGCCAAGATTATGGTGAATATGGAGAACGAGTAAGGAATGCTTGCTGGGGTTATCTTTGTCAA AGTGGATCCATGGAACTGAAAGAGGTTCTTCCGAAGCTTTCATCTCAAACTCTGCATGCATTGTTGACCTCAGATGAATTGTGGGTAGTTAGTGAAGAGA AACGGTTTGAGCTGGCACTGTACACCCTTCTATCAAAAAGTGCTTTTTCCAAGAGAGAAAGATCTGACGGTGGCACCTCCGTATCTGAGTTGTGTGTGAG TATGCATAGTGATTCTTCCCAAATGAAAGGCAAAGAATTGATTGATAACGCTAAGACTGGTTCAGGACGGTTAAGTTTAAAAGATGACCTAGAAGGTCAG GCTATGGCACATAATCTTCTGGTTGATCTTGTTGAGTGTGAAGTCGACTATCGAGGGCCACAAGTTTCGTATTCACATTCTAATGTGGGAATGGGATCCT TGCACTCGTGCAGCATGACACAATCATCTCCCATGAGTAACTCATTTTCACAAATAAATGGAAATACAAACTCGTGCTCTTATGTTGAAATGCCGAGACT GGCAGCTAGTGAATTTGCTGCGGAGGGTCCTTCTGGGGAAAGCTCCTACCAATTGAACAACAACAATTGGCTTGGAAGTGACCAATCTGGGAATAGCCCT TCAGCAGATCCTTCTTGCAGTGGGCTTATGCTTAATGATCGTGGAAGATGTGACATGAATTCCCTCTCATGGGGCGGAAGAGTCGTGGGAGAAAGGCAGG TCAAGAGTTATGCTAAAGCAAACTGTGGTGTTCACGGAGAGGACTATGACACATTCGTGAACATATTTGAAGGGGGGTCTCTCTTGTACTGCAACATGTC TTTTGAGGCACTCTTGAATGTGAGAAAACAACTTGAGGAGTTAGGTTTCCCATGTAAGGCTGTCAATGATGGTCTTTGGCTGCAGATGCTATTAAGCCAA AGAGTACAGGAAACGGGTGCCGACACATGTAAACTATGCTGCTTCACCAGCATGTCATGCACTTGCAGACAGCAATTTGGATTTTCACGTCAAGAGCATG AGCATACCAATTGCCCAGTCAACATGGGAAATGTGTATGTTGCTGATTCTGCTCCAGGTGGCGGGAACAGCGTCTTTAGACCAGTTCGTGTTCATGTCAG GGGACCTGGTGATGGCCTTGCTGGCATTGGACGTGGAACTACGTTTGTGCCAGCAGCTGCGTGGCCCCCTACCCGTTTTGTCTTTTCACGAGTGCCCTTC GGTATTGGCAATAGAAATGGCCAACAGCAGTCTCTTCCAAATGATGATTCAGAGAGTAGAACCGATCACACGGGGGACCTTTCTGGTGATGGGTTAACTG CTCTAGTTGGTTTAAGCCAGGGAGGGGTCAGCACTTCTAATGTGCAGACTCAACATACAGAGAGAGGTTACGAGACAGATATGCAAGAGAGAATATCTTC TACTGCTCCAAGTACTAGTGGTATTGCTGTTCAGGTGCTAGATTCACCTGAGCAAGCCATCGGCATTGAATGGGAAAGTGAAAATGATTCCTCCATATCA TTGGACATAAATACACCTTTGAGCCATTTTCCTCCTTTCCGGTTTGGGGTTGAATTTGCGGATGTACTTCGTCTAAGCGATGGCCAAGTCAAGCATTCTC CTGAATTTTTCTATGCCGGTTCCCTGTGGAAGGTTAGTGTTCAGGCTTTCAATGACGAAGATCCTCAAGGTCGCCGAACCCTTGGATTGTTTCTCCATCG ACGCAAGGCAGAGATCACTGATTCACTAAGAAAGGTTCATATGTACATTGACTCGCGTGAAAAAGTTACTGCCCGTTATCAGTTGATATGTCCATCAAAA AGAGAAGTGACGGTGTATGGAAGCTTGAAACAAAGAGGCACCCTTCTACCGAAAGCTCCGAAAGGATGGGGATGGAGAACTGCTTTGTTCTTCGACGAGC TTGCTGAACTCCTGCAATACGGGACCTTAAGAGTTGCGGCAGTCGTCCAGCTTGTATGA
AA sequence Show only first row Show all	>Lus10002874 pacid=23176877 polypeptide=Lus10002874 locus=Lus10002874.g ID=Lus10002874.BGIv1.0 annot-version=v1.0 MEPQYPSIGRPRSFGQVKVTIQPSSTPQQHSSDSDRTNTDLRALDCNLNSLCDHIQMEGFNSGSFSDVVVHAMGSTYRLHRLILCRSSYFRNMLHGPWKE ATSPVVNLNVDDKNVNADAIETALAYLYGHHPKLDDNNAFRVLAAASFLDLQDLCAICTDFIISELWSSNFLAYQVFAESQDYGEYGERVRNACWGYLCQ SGSMELKEVLPKLSSQTLHALLTSDELWVVSEEKRFELALYTLLSKSAFSKRERSDGGTSVSELCVSMHSDSSQMKGKELIDNAKTGSGRLSLKDDLEGQ AMAHNLLVDLVECEVDYRGPQVSYSHSNVGMGSLHSCSMTQSSPMSNSFSQINGNTNSCSYVEMPRLAASEFAAEGPSGESSYQLNNNNWLGSDQSGNSP SADPSCSGLMLNDRGRCDMNSLSWGGRVVGERQVKSYAKANCGVHGEDYDTFVNIFEGGSLLYCNMSFEALLNVRKQLEELGFPCKAVNDGLWLQMLLSQ RVQETGADTCKLCCFTSMSCTCRQQFGFSRQEHEHTNCPVNMGNVYVADSAPGGGNSVFRPVRVHVRGPGDGLAGIGRGTTFVPAAAWPPTRFVFSRVPF GIGNRNGQQQSLPNDDSESRTDHTGDLSGDGLTALVGLSQGGVSTSNVQTQHTERGYETDMQERISSTAPSTSGIAVQVLDSPEQAIGIEWESENDSSIS LDINTPLSHFPPFRFGVEFADVLRLSDGQVKHSPEFFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDSLRKVHMYIDSREKVTARYQLICPSK REVTVYGSLKQRGTLLPKAPKGWGWRTALFFDELAELLQYGTLRVAAVVQLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15840			BTB/POZ domain-containing prot...		Lus10002874 [exp]	0	1
AT4G15840			BTB/POZ domain-containing prot...		Lus10002873 [exp]	2.4	0.8570
AT2G40130			Double Clp-N motif-containing ...		Lus10028282 [exp]	10.8	0.8060
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10015666 [exp]	12.7	0.7794
AT2G03140			alpha/beta-Hydrolases superfam...		Lus10033426 [exp]	12.8	0.7729
AT3G51150			ATP binding microtubule motor ...		Lus10025969 [exp]	18.6	0.7716
AT4G03020			transducin family protein / WD...		Lus10033996 [exp]	21.2	0.7410
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10027521 [exp]	25.1	0.7357
AT4G04320			malonyl-CoA decarboxylase fami...		Lus10020031 [exp]	29.0	0.7128
					Lus10008674 [exp]	29.7	0.7556
AT3G63340			Protein phosphatase 2C family ...		Lus10014699 [exp]	30.5	0.7638

Compare expression of checked genes

Lus10002874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.