Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16630 1112 / 0 ATKINESIN-13A, KINESIN-13A P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G16060 575 / 0 ATP binding microtubule motor family protein (.1) AT3G49650 200 / 8e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18550 190 / 7e-51 ATP binding microtubule motor family protein (.1) AT4G15885 167 / 1e-48 kinesin motor protein-related (.1) AT5G47820 179 / 2e-46 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60930 173 / 3e-44 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27550 168 / 4e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 169 / 5e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 169 / 5e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023103 [exp] 1591 / 0 AT3G16630 1121 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037546 [exp] 587 / 0 AT3G16060 994 / 0.0 ATP binding microtubule motor family protein (.1) Lus10011449 [exp] 569 / 0 AT3G16060 983 / 0.0 ATP binding microtubule motor family protein (.1) Lus10019245 [exp] 219 / 6e-61 AT3G49650 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011579 [exp] 220 / 2e-60 AT3G49650 950 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000392 [exp] 190 / 1e-49 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000762 [exp] 189 / 2e-49 AT5G60930 1498 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010047 [exp] 178 / 5e-46 AT5G47820 1569 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018731 [exp] 170 / 2e-43 AT5G47820 1600 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G013500 [exp] 1234 / 0 AT3G16630 1141 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G221400 [exp] 1229 / 0 AT3G16630 1167 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.018G079800 [exp] 650 / 0 AT3G16060 755 / 0.0 ATP binding microtubule motor family protein (.1) Potri.003G053800 [exp] 613 / 0 AT3G16060 1010 / 0.0 ATP binding microtubule motor family protein (.1) Potri.008G223000 [exp] 609 / 0 AT3G16630 574 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G182300 [exp] 603 / 0 AT3G16060 990 / 0.0 ATP binding microtubule motor family protein (.1) Potri.012G058400 [exp] 187 / 2e-49 AT1G18550 872 / 0.0 ATP binding microtubule motor family protein (.1) Potri.005G150800 [exp] 182 / 4e-47 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G024700 [exp] 179 / 2e-46 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G106000 [exp] 179 / 3e-46 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10002876 pacid=23176885 polypeptide=Lus10002876 locus=Lus10002876.g ID=Lus10002876.BGIv1.0 annot-version=v1.0 ATGGGTGGGCATATGCACCAGACTAATGCTGCTGCGGCGGCGGCGTTCTACGATCACCCCGGAGCTCTGCAGAATGCATCTGCCACGAACGATGCCGGCG ATGCAGTGATGGCGCGGTGGCTACAGTCTGCCGGCCTGCAGCATTTGGCCTCTCCCCTGGCGTCCACCGATCAGCGCGCGCTTCCTAATCTTCTAATGCA GGGTTACGGAGCGCAATCTGCTGAAGAGAAGCAGAGACTTTTCAAGCTAATGAGAAATCTTAATTTCAATGGCGAATCCGGATCTGAACCTTACACACCA ACTGCACAAACATCAACCACTGCAGCAGCATCGGATGGCTTTTATTCCCCCGACTTCAGGGGGGATTTTGGAGCTGGCCTATTGGACCTTCATGCCATGG ATGATACAGAGCTTTTGTCGGAGCATGTTATGTCGGAACCATTTGACACATCGCCCGTCATGCCTGATATTAGTAGAGGATTTGAGAATGAACTCTACAT GGCTGGTGGACGACACCAAACTGGGCAAATTGATGCAGAACCATCAGTTCTTCTCCCTGTTAGTGAGAAAGATACCATTGGTAGGGAAAGTAACGTGGCT AAGATCAAAGTTGTGGTGCGTAAGAGACCACTGAACAAGAAGGAGCTTGCAAAGAAAGAAGATGATGTTGTGTATGTCACAGACAATTCCCTGACCGTCC ATGAACCCAAACTAAAGGTGGACTTGACAGCATATGTTGAGAAGCATGAGTTCTGTTTCGATGCCGTTCTTGATGAAGATGTGAACAATGATAAGGTGTA CAGAGACACTGTGGAGCCAATCATTCCAACTATATTTCAGAAGACAAAAGCTACGTGTTTTGCATATGGCCAGACAGGTAGTGGAAAGACTTATACAATG CAACCTTTGCCTCTCAGAGCAGCTCAAGATATGGTTCGATTATTGCACCAGCCAGTTTACCGTTCCCAGAAATTCAAATTGTGGCTCAGTTACTTTGAGA TATATGGAGGGAAACTCTTCGATCTTCTGTCTGAAAGAAAGAAGCTGTGTATGAGAGAAGATGGCAGACAGCAGGTTTGCATTGTTGGTCTACAAGAATT TGAGGTTTTGGATGTACAAATCGTCAAGGAGTACATTGAGAAGGGAAATGCTGCAAGAAGTACTGGGTCAACAGGCGCCAATGAGGAATCTTCAAGGTCA CATGCTATATTACAACTTGTTATTAAGAAGCATAAAGAAGTAAAAGAGACAAGGAGGAACAACAACATTGATGTGAATGAGGCTAAAAATGGAAAGTTGG TTGGGAAAATTTCCTTCATTGATCTTGCTGGAAGTGAGCGAGGAGCAGATACCACTGACAATGACAGACAGACAAGGATTGAAGGTGCAGAAATCAACAA GAGTCTTCTGGCTCTTAAGGAGTGCATCCGTGCACTCGACAATGAGCAGCTCCATATACCATTCCGTGGGAGCAAGCTAACAGAAGTACTTCGTGATTCC TTTGTTGGCAACTCGAGGACTGTAATGATCTCTTGTATTTCTCCAAATGCGGGCTCATGTGAACACACATTGAATACGCTAAGATATGCTGATAGGGTAA AAAGTCTTTCCAAGGGTAGCAACTCAAAAAAGGATCAGCCTGTAATTTCATCAACTAATAAGGATGTGCCTCCAGCATCTTCTTTGGATGTTTCCTCCGA CATTGATGAAATGTTTGAACAACGAGAAGTTGCAAGAGCTGTTGATATGGCCAGAAGGTTTGCAGAGAAAGAAAGTGCGTCTTACAACCCCAGTACTGAT TATGACAGACAGCCATCAAATATTCCTTCAATTTATACCTTCAATGGGCGACCAGAAAGTGGGTCTGCTTCCAGCTTAACTGACCGGGAGAGAATTGAAG TTATTAATGGACCAGCAAATGCTAAAAAGAGCTCATCATACTCCCAAACCCCGGTTGAGGTGGAAGAAAAAGTGCAGAAGGTATCACCACCTCATCGAAA AGTACTGAGGGAGGAAAAAACCGAGAAGTTGGGGAACTGGGCAAAGAAAGATGGCAGCTCAGCCGATGCATCCACCACAAATTCTAGGATACCGGGTATT GCAAACCTCTCTTCAAATACTGTTGGAACAAGGCAAGAACCTGATTCAACTGCAGATGGAAGTATCAATGCTATACTTAAGGAAGAAGAGGCTCTAATTA CAGCACATAGAAAAGAGATAGAGGATACGATGGAGATTGTTCGTGAGGAAATGAAGCTGTTGGCAGAAGTTGACCGACCAGGGAGCCAGATAGACAACTA TGTAACTCAGCTGAGTTTTGTACTGTCGCGAAAGGCTGCAGGGTTGGTTAGCCTCCAAGCTCGCCTTGCTAGGTTCCAGCATCGGCTAAAGGAACAGGAG ATCCTTAGTCGTAAACGAGTTCCTCGCTAG
AA sequence Show only first row Show all	>Lus10002876 pacid=23176885 polypeptide=Lus10002876 locus=Lus10002876.g ID=Lus10002876.BGIv1.0 annot-version=v1.0 MGGHMHQTNAAAAAAFYDHPGALQNASATNDAGDAVMARWLQSAGLQHLASPLASTDQRALPNLLMQGYGAQSAEEKQRLFKLMRNLNFNGESGSEPYTP TAQTSTTAAASDGFYSPDFRGDFGAGLLDLHAMDDTELLSEHVMSEPFDTSPVMPDISRGFENELYMAGGRHQTGQIDAEPSVLLPVSEKDTIGRESNVA KIKVVVRKRPLNKKELAKKEDDVVYVTDNSLTVHEPKLKVDLTAYVEKHEFCFDAVLDEDVNNDKVYRDTVEPIIPTIFQKTKATCFAYGQTGSGKTYTM QPLPLRAAQDMVRLLHQPVYRSQKFKLWLSYFEIYGGKLFDLLSERKKLCMREDGRQQVCIVGLQEFEVLDVQIVKEYIEKGNAARSTGSTGANEESSRS HAILQLVIKKHKEVKETRRNNNIDVNEAKNGKLVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNEQLHIPFRGSKLTEVLRDS FVGNSRTVMISCISPNAGSCEHTLNTLRYADRVKSLSKGSNSKKDQPVISSTNKDVPPASSLDVSSDIDEMFEQREVARAVDMARRFAEKESASYNPSTD YDRQPSNIPSIYTFNGRPESGSASSLTDRERIEVINGPANAKKSSSYSQTPVEVEEKVQKVSPPHRKVLREEKTEKLGNWAKKDGSSADASTTNSRIPGI ANLSSNTVGTRQEPDSTADGSINAILKEEEALITAHRKEIEDTMEIVREEMKLLAEVDRPGSQIDNYVTQLSFVLSRKAAGLVSLQARLARFQHRLKEQE ILSRKRVPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10002876 [exp]	0	1
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Lus10043092 [exp]	4.2	0.9240
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028401 [exp]	5.1	0.9123
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10007585 [exp]	5.3	0.9252
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10002209 [exp]	5.9	0.9193
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10003270 [exp]	6.2	0.9209
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Lus10036948 [exp]	7.2	0.9208
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10000679 [exp]	11.3	0.8932
AT4G38050			Xanthine/uracil permease famil...		Lus10025716 [exp]	11.8	0.9118
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10035838 [exp]	13.4	0.9054
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10036621 [exp]	13.9	0.9152

Compare expression of checked genes

Lus10002876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.