Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16640 234 / 1e-79 TCTP translationally controlled tumor protein (.1) AT3G05540 227 / 5e-77 Methionine sulfoxide reductase (MSS4-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033959 [exp] 303 / 6e-107 AT3G16640 256 / 2e-88 translationally controlled tumor protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G221200 [exp] 251 / 1e-86 AT3G16640 228 / 2e-77 translationally controlled tumor protein (.1) Potri.010G013400 [exp] 245 / 4e-84 AT3G16640 217 / 5e-73 translationally controlled tumor protein (.1) Potri.005G024800 [exp] 243 / 3e-83 AT3G16640 284 / 8e-100 translationally controlled tumor protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0080 [flax] [poplar] Beta-tent PF00838 [flax] [poplar] TCTP Translationally controlled tumour protein
Representative CDS sequence Show only first row Show all	>Lus10002877 pacid=23176889 polypeptide=Lus10002877 locus=Lus10002877.g ID=Lus10002877.BGIv1.0 annot-version=v1.0 ATGTTGGTCTACGAGGATCTTGTTACCGGTGATGAGCTTCTCTCTGACTCATTCCCTTACAACGAAATTCTGGATGGAGCTTTGTGGGAAGTTGAGGGAA AGTGGGTTGTTCAAGGAGCCGTTGATGTGAACATTGGTGCCAACCCTTCTGCTGAAGGAGCTGATGAAGATGAGGGTGTTGATGACCAGGCTGCTAAGGT CGTTGACATTGTTGACACCTTCAGACTCCAGGAGCAACCGGCCTTTGACAAGAAACAGTTTGTCACATACATTAAGAGGTACATCAAGGCCTTGACAGCT AAGTTGGACGATGAGCAGAAGGAGAAGTTCAAGAAGAACATTGAGGCAGCAACTAAGTACCTCCTCTCCAAGCTCAGCGACCTTCAGTTTTTCGTTGGTG AGAGCATGAAGGATGATGCCACTCTGGTGTTTGCTTACTACAAGGATGGTGCCGCAGACCCGACATTTTTGTACCTCCCCCAAGCTTTGAAGGAGGTCAA GTGCTAG
AA sequence Show only first row Show all	>Lus10002877 pacid=23176889 polypeptide=Lus10002877 locus=Lus10002877.g ID=Lus10002877.BGIv1.0 annot-version=v1.0 MLVYEDLVTGDELLSDSFPYNEILDGALWEVEGKWVVQGAVDVNIGANPSAEGADEDEGVDDQAAKVVDIVDTFRLQEQPAFDKKQFVTYIKRYIKALTA KLDDEQKEKFKKNIEAATKYLLSKLSDLQFFVGESMKDDATLVFAYYKDGAADPTFLYLPQALKEVKC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16640		TCTP	translationally controlled tum...		Lus10002877 [exp]	0	1
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10014029 [exp]	1.0	0.9538
AT3G16640		TCTP	translationally controlled tum...		Lus10033959 [exp]	1.4	0.9459
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10029426 [exp]	4.9	0.9114
AT3G48140			B12D protein (.1)		Lus10042151 [exp]	6.2	0.9160
AT5G23590			DNAJ heat shock N-terminal dom...		Lus10027828 [exp]	6.3	0.9104
AT5G53045			unknown protein		Lus10017942 [exp]	7.4	0.8847
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Lus10015693 [exp]	7.7	0.9096
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10004221 [exp]	8.7	0.8819
AT5G22720			F-box/RNI-like superfamily pro...		Lus10024696 [exp]	9.8	0.8570
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Lus10009810 [exp]	11.5	0.8846

Compare expression of checked genes

Lus10002877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.