Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21430 725 / 0 MYB ATALY3 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2) AT3G05380 331 / 1e-96 MYB ALY2, ATALY2 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) AT5G27610 183 / 4e-47 MYB ATALY1 ARABIDOPSIS THALIANA ALWAYS EARLY 1, ALWAYS EARLY 1, DIRP ;Myb-like DNA-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033961 [exp] 2023 / 0 AT3G21430 941 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2) Lus10004489 [exp] 178 / 2e-45 AT3G05380 558 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) Lus10029910 [exp] 174 / 3e-44 AT3G05380 549 / 1e-179 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G216600 [exp] 1132 / 0 AT3G21430 1006 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2) Potri.010G023201 [exp] 1110 / 0 AT3G21430 939 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2) Potri.005G029000 [exp] 391 / 4e-118 AT3G05380 813 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) Potri.013G020500 [exp] 379 / 2e-113 AT3G05380 807 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06584 [flax] [poplar] DIRP DIRP
Representative CDS sequence Show only first row Show all	>Lus10002879 pacid=23176886 polypeptide=Lus10002879 locus=Lus10002879.g ID=Lus10002879.BGIv1.0 annot-version=v1.0 ATGGCTCCATCAAGAAAATCTAGAAGTGTGAATAAAAGGTTTTCCGGCATTGATGAGGTTGACACTAATGACGGTGCAGAATATGCCAACAAAAGTAGGC AGAAGAAACGCAAATGGACTGGCAAATTAGGTCCGAAATGGACAAAAGAAGAGCTTGAACGTTTCTACAAAGCATATCGCAAGCATGGTAAAGACTGGGA GAAGGCATACTTATCTCTTCCTAAAGGCTATGCTTCGGCAGCTGGACTGATTGCAATGATGACAGATCACTACTCTAATCAGGTGGATAGTGACAGTGAA CAAGAAGTAAATGAGGGTCCCAGCACTTCCCACAAACCCCAGAAACGTGCACGGACGGCCAAAGGTTCAGCCGTGTCACCAGTTACAGATCTTTCAAAAT CACTATCGGCTGCATCAAATTATGGCTGTTTGTCTTTGTTGAAGAGGAGGCGCTCAGAAAGCAGACCTTGGGCTGTAGGAAAACGGACTCCTCGAGTCCC AGTATCTTATTCTTATGACAAAGAAAAAGAAGAGAGATATATTTCACCAATGCGGCAGGGTCTAAAGTTGAAGGGCGGGGCATTTGATGATAATAACGAT GATGATGGCGATGATGATGTTGCCCATAGGCTTGCATTAGCACTGACAGTGGCTTCACAAAGAGGGCCCACTCCGCAAGTTTCTCAAACATTGACTAGGA AAAAAGGTTCATCCTCATCGGCCCAAAATGGTGAACAAATGCATGCTGATTCAGAGATGACGAGTGCAAAGCTGCGCTGTAGTGAAATGGATGACAGCGG TTGTGAACTAAGTCTAGGAAGTACAGAAGCAGACACTGGAGATTATACAAGGGATAAAAGGTTCTTGAAAGGAAAGATGTACCAGAGATGGAGATCAGAA CAAGAAGAAAGTATGGACAATCATTTGGATGAGATAAAGGAAGCCTGTAGTGGAACTGAGGAAGGGCAGAAGCCCGCTGGTAAAGGAAGATTCGATGCTG AAGTTACTAATGCAAAACTGCAGAGATCCTCCTATGATAAGGTTCCGAAGAAGAGAAGCAAGAAGGTCCTTTTTGGAGAAGGTGAAGATATTGCCTTGGA TGCGTTGCAAACACTAGCTGATTTGTCCTTGAGACTGCCAGAGGGTGATACTGAGTCATCTGTGCATGTTCAGGAAGGAAAAACTGTAAATGTAGCCAAG TCTAAGCTGAAAGGGAATTCTCCAGCTTCTGGAATTAAAGTCACTCCGTCCAAGTCAAATAAACAAGCAAAATCTACACAAAATGTCATTGCTTTACCTG AATTAGAGGGAAGCAATCAGGTTAATGCCGGGCCTCGGAAAAGGAGGAACAAGCCCCTACAATCAAAAACGTCAGAAAAGGAACAACACAGTGGTCCTCA CTTGGGTGAATCACAGAAAGTTAAGGTTGTTGATGATGTAAATACCTCTATCGATGATGCCAAACCCTCTCACAATGCTACATCTGGAAAGCAAAAGAGA TCAACAAAACTTCCAGAGCGTACTTCCTCAAATGCTGATCCTGGAAGAGAGTCACATGATTCAGGTCCATCAGCAGCTCAAGCAGTATCTTCAAACCAGG TCATTCTTCCTACTAAAGTGCGGAGTCGCCGCAAGATAAGCACACCAAAAACACTTCTTGAGAAAGATACAAAGACTTGCGAGAACATTACACATGTTCA ATCCAAAATTTCAACACCTTCATTTCCGGACCGACCTCTTCCTGCTAAGGAAAAGCTTAGCAATTGCCTCTCTAGTCGCAGACTAAGGCAATTTTCTCTT GGTAAGCCTCGGAGATTTTCCAGACAATTTTTGAAGGAAGAGAAAAAGAAGCTTTATCAATATCGGGAGTCCGTTAGGGAACATTATACTGAACTTCGTG CTGGTACTAGGGAAGGACTTCCAACGGATCTGGCTCGACCTGTATCAGTTGGGCAACGCGTTATTGCACTTCATCCACGGACAAGAGAAATCCATGATGG GAGTGTGCTAACTGTTGATCATAATAGGTGCTGTGTTCGATTTGACCAACCTGAGCTCGGGTTCGAATTTGTCATGGACATTGATTGCATGCCATTAAAT CCAGAGGAAAATTTGCCTGCATCTCTTACCAGGCATGGTCTTGGTATCAAGAAGTATATGGAGAACTTGAACGAGTGCAAAACAAGTGCGTTACAGGCTG AAAACGCGATGGAAGGGTACATAAAGTTTCACCAAGAGAACCTGGATGCCACCAATGGTTTCTCCCATATTCCTCCCCCAAATTTTCATACCCTGCGGCA ATCACAGGGTCTCTCCCTAGGTCTAGCTACGCCAGTTATTACTGGATTTGGTGAAACCATCAATACCCAAGCAGCAAACGCTCAGCCTTCCATTCATACA CATAACCAAGCAAAGGAAGCTGATATTCAAGCATTATCTGAACTAACTCGAGCTCTTGAAAAGAAGATACCTAGGAACTCTTTAAGGTATTCTGCTGTTA GTACTCGAGAAAGAAAGCTGATGAGCTCTAAACTAAACGTGCAGGACGCTGTGGTATCTGAATTGAAGCGCCTGAATGAGGACGTGTTGGAAAGTCAAAA CAATGGAGAAAAAAATAATCTGAGAGATTCAGAATCTTTCAAGAAGCACTATGCTGCGCTTTCATCTGCACTTTCTAGCTTGCGACAGCGAAACACATAC CAAGTAATCACTCCAGCTATACCCATGATGACTACAGGCGACCCTATTTTGTACTACAGCTCTTTCAATCCTCATCCTACTGAAGAAGTCCAAGATTCCG GGTCTCATGTTGCTGAAATTGTCGAATCTTCCAGATCAAAGGCCCAAATAATGGTCGATGCAGCAATGCAGGCTGTGACATCTCTAAATAAGGAAGGAAG CAACATCGAGAGTATCGAGGAAGCCATAGATTTCGTGAATAATCAGCTTTCCATTGATGATTTAACCACGCAATCCTCCAGACCGCCTCATCCTGAGAAT TCTACTCAGGGTGCTCTTGGAGGATCCCAAGATCAGTCAAGTTCTGGCACAGCAAATGTCGAGGCCAATCACATGTCAGATACCAAGTCGTCGAAATACT TATCTGACTTGAACGAAGCGCAAATTCCTTCAGATCTAATATCGCAATCTGTAGCCACCTTGCTCATGATTCAGAAATGTACAGAGCGACAGTTTCCCCC GAGTGACATAGCTCAAGTGTTGGACTCAGCGGTGGCGAATTTGAAGCCATCGTGCTCGCAGAATCTCCCGGTTTATGCTGACATACAGAAATGCATGGGG ATCATACGGAACCAAATATTGGCGCTCATTCCCACGTAA
AA sequence Show only first row Show all	>Lus10002879 pacid=23176886 polypeptide=Lus10002879 locus=Lus10002879.g ID=Lus10002879.BGIv1.0 annot-version=v1.0 MAPSRKSRSVNKRFSGIDEVDTNDGAEYANKSRQKKRKWTGKLGPKWTKEELERFYKAYRKHGKDWEKAYLSLPKGYASAAGLIAMMTDHYSNQVDSDSE QEVNEGPSTSHKPQKRARTAKGSAVSPVTDLSKSLSAASNYGCLSLLKRRRSESRPWAVGKRTPRVPVSYSYDKEKEERYISPMRQGLKLKGGAFDDNND DDGDDDVAHRLALALTVASQRGPTPQVSQTLTRKKGSSSSAQNGEQMHADSEMTSAKLRCSEMDDSGCELSLGSTEADTGDYTRDKRFLKGKMYQRWRSE QEESMDNHLDEIKEACSGTEEGQKPAGKGRFDAEVTNAKLQRSSYDKVPKKRSKKVLFGEGEDIALDALQTLADLSLRLPEGDTESSVHVQEGKTVNVAK SKLKGNSPASGIKVTPSKSNKQAKSTQNVIALPELEGSNQVNAGPRKRRNKPLQSKTSEKEQHSGPHLGESQKVKVVDDVNTSIDDAKPSHNATSGKQKR STKLPERTSSNADPGRESHDSGPSAAQAVSSNQVILPTKVRSRRKISTPKTLLEKDTKTCENITHVQSKISTPSFPDRPLPAKEKLSNCLSSRRLRQFSL GKPRRFSRQFLKEEKKKLYQYRESVREHYTELRAGTREGLPTDLARPVSVGQRVIALHPRTREIHDGSVLTVDHNRCCVRFDQPELGFEFVMDIDCMPLN PEENLPASLTRHGLGIKKYMENLNECKTSALQAENAMEGYIKFHQENLDATNGFSHIPPPNFHTLRQSQGLSLGLATPVITGFGETINTQAANAQPSIHT HNQAKEADIQALSELTRALEKKIPRNSLRYSAVSTRERKLMSSKLNVQDAVVSELKRLNEDVLESQNNGEKNNLRDSESFKKHYAALSSALSSLRQRNTY QVITPAIPMMTTGDPILYYSSFNPHPTEEVQDSGSHVAEIVESSRSKAQIMVDAAMQAVTSLNKEGSNIESIEEAIDFVNNQLSIDDLTTQSSRPPHPEN STQGALGGSQDQSSSGTANVEANHMSDTKSSKYLSDLNEAQIPSDLISQSVATLLMIQKCTERQFPPSDIAQVLDSAVANLKPSCSQNLPVYADIQKCMG IIRNQILALIPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10002879 [exp]	0	1
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10033961 [exp]	1.0	0.9467
AT4G02680		EOL1	ETO1-like 1 (.1)		Lus10022084 [exp]	1.7	0.9109
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	4.0	0.9256
AT3G49410			Transcription factor IIIC, sub...		Lus10042710 [exp]	4.0	0.8928
AT1G31810		AFH14	Formin Homology 14 (.1)		Lus10003956 [exp]	4.1	0.8803
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10024895 [exp]	8.1	0.8839
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10030445 [exp]	8.4	0.8863
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10030688 [exp]	9.6	0.8644
AT1G07705			NOT2 / NOT3 / NOT5 family (.1....		Lus10040875 [exp]	10.0	0.8656
AT4G21660			proline-rich spliceosome-assoc...		Lus10018475 [exp]	11.5	0.8665

Compare expression of checked genes

Lus10002879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.