Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18550 359 / 1e-119 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G47850 353 / 2e-117 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT3G06410 345 / 2e-114 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G02830 229 / 2e-70 C3HZnF ZFN1 zinc finger protein 1 (.1) AT1G04990 187 / 4e-54 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G48440 169 / 5e-47 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G16540 152 / 2e-41 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT2G32930 128 / 3e-32 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT5G63260 124 / 8e-31 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G12680 121 / 2e-29 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033962 [exp] 625 / 0 AT5G18550 456 / 7e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10007941 [exp] 332 / 2e-109 AT2G47850 524 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10013476 [exp] 331 / 5e-109 AT2G47850 532 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035248 [exp] 325 / 1e-106 AT2G47850 490 / 8e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10034620 [exp] 297 / 8e-97 AT2G47850 479 / 2e-168 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10026996 [exp] 272 / 3e-86 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10020196 [exp] 270 / 2e-85 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10035330 [exp] 198 / 2e-57 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10029988 [exp] 183 / 1e-51 AT1G04990 323 / 2e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G022500 [exp] 484 / 9e-169 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G215700 [exp] 481 / 3e-167 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.013G086800 [exp] 279 / 7e-89 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.019G053200 [exp] 279 / 8e-89 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.014G159500 [exp] 216 / 9e-65 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G223700 [exp] 212 / 5e-63 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.008G080300 [exp] 158 / 2e-42 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.015G089100 [exp] 128 / 4e-32 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.012G092500 [exp] 119 / 7e-29 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.010G176300 [exp] 119 / 1e-28 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10002880 pacid=23176890 polypeptide=Lus10002880 locus=Lus10002880.g ID=Lus10002880.BGIv1.0 annot-version=v1.0 ATGTACCGTGGGGGTGCTCCGAGAATTCCGGGGAGGGGTAACTTTTCGAGTATGTACGGACGAGGTCAGGAGGGTTCCCAGTCGGATCCGTCCCCGGAAT GGACTACTACTGCTCCAGGACCCGAAACCGGCCTCGAAGAGGGACTCTGGCAGTTGGGATTGGGTGGAGGAGAAGGCGAAAGCGGGTACCCGGAAAGGCC CGACGAGGCCGATTGTATCTACTACTTGAGGACAGGGTTTTGCGGGTACGGAGCGAGGTGTCGGTTCAACCATCCACGTGACCGAGCTGCGGTACTGGGA GCTGCTAGGGCTGGCGGAGGAGAATTCCCCGAACGATATGGCCAGCCCGTGTGTCAGTATTATATGAGGACTGGAAGCTGTAAATTTGGTGCTTCCTGCA AATATCACCACCCGAAGCAGGCACTTGGTTCAGTTGCTCCCGTGCCTCTAAATTACTATGGTTACCCATTGCGTCCGGGTGAGAAGGAATGTACATACTA TATAAAAACTGGGCAGTGTAAGTTTGGCGCTACATGTAAATTTGATCATCCGCAGCCACCTAATGTACAAGTTCCACCAGAGTCACTGCCGCCACAAATA GCACCCATGGCCAGTCCGTTAGCTGCTCCTGCATTATACCCCCCACCGATGCAGTCTCCACAAGTTCCTTCATCCCAACAATACGGGGTATTAGTTGCTA GGCCTCCTTTGATGCAAAGCTCATATGCACAAGGTCCTTATGGTCCCATGCTTCTTTCACCAGGTGGGGTGGTTTCCTACCCCAGCTGGAGCCCCTATCC GGGACCAGTAAATCCTGTAGCTCAGTCTCCTGGTACACAGTCCGCACTTGGCTCAAGTTCTCTATATGGGATAACTCAATTGTCTCCCTCAGCTCCTGCC TATACTGGGGCTTATGCACCTATGCCTTCTTCAATTGGTCCTTCAAGTAGCAGCCAAAGGGATACTTCTTTTCCAGAGAGACCTGGTCAACCAGAATGTC AATACTACTTGAAGACTGGTGATTGTAAATTTGGATCATCATGTAGATACCACCATCCATCAGAACTAAGTGCACCAAAATCAAATCTTGCTCTTAGTCC CTTGGGCCTTCCCCTTCGCCCAGGAGCACCACTTTGTACTCACTATGCGCAGCGAGGACAATGCAAGTTTGGGTCTGCATGCAAATTTGATCATCCAATG GGAATGAGCTACAGTCCCTCTGCATCATCCTTGGTTGATATGCCGGTTGCACCATATCCCGTGGGCTCTTCAATCGGTACTCTAGCTCCATCTTCCTCAT CCACAGATATGCGTCCAGAACTGATTTCAGGATCCAGCAAGGAGTCCAGTTCTAGCAGGATAGCATCATCACCAAGTGGGTTCATTGGCTCAACTTTCTC AAAGAACGAAACTGCTTCTCCTTCAAGTATGCAGTCGTCTGGTTCGTTAACAGGCAGCAGCAGCAGTGCGCATGCCTCCTCAAGTTAA
AA sequence Show only first row Show all	>Lus10002880 pacid=23176890 polypeptide=Lus10002880 locus=Lus10002880.g ID=Lus10002880.BGIv1.0 annot-version=v1.0 MYRGGAPRIPGRGNFSSMYGRGQEGSQSDPSPEWTTTAPGPETGLEEGLWQLGLGGGEGESGYPERPDEADCIYYLRTGFCGYGARCRFNHPRDRAAVLG AARAGGGEFPERYGQPVCQYYMRTGSCKFGASCKYHHPKQALGSVAPVPLNYYGYPLRPGEKECTYYIKTGQCKFGATCKFDHPQPPNVQVPPESLPPQI APMASPLAAPALYPPPMQSPQVPSSQQYGVLVARPPLMQSSYAQGPYGPMLLSPGGVVSYPSWSPYPGPVNPVAQSPGTQSALGSSSLYGITQLSPSAPA YTGAYAPMPSSIGPSSSSQRDTSFPERPGQPECQYYLKTGDCKFGSSCRYHHPSELSAPKSNLALSPLGLPLRPGAPLCTHYAQRGQCKFGSACKFDHPM GMSYSPSASSLVDMPVAPYPVGSSIGTLAPSSSSTDMRPELISGSSKESSSSRIASSPSGFIGSTFSKNETASPSSMQSSGSLTGSSSSAHASSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002880 [exp]	0	1
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033962 [exp]	1.0	0.9496
AT4G33480			unknown protein		Lus10003851 [exp]	2.0	0.8215
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10007319 [exp]	3.5	0.7970
AT4G34100			RING/U-box superfamily protein...		Lus10019839 [exp]	6.3	0.7877
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10009558 [exp]	7.5	0.7967
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Lus10016911 [exp]	8.4	0.7636
AT2G25920			unknown protein		Lus10001457 [exp]	10.6	0.7202
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10003543 [exp]	11.3	0.7621
AT3G53970			proteasome inhibitor-related (...		Lus10032055 [exp]	11.7	0.6846
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10022150 [exp]	12.7	0.7933

Compare expression of checked genes

Lus10002880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.