Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 72 / 2e-14 Mitochondrial transcription termination factor family protein (.1) AT1G21150 59 / 4e-10 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002883 [exp] 248 / 6e-81 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 84 / 1e-18 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 84 / 1e-18 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 80 / 5e-17 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 79 / 7e-17 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10016553 [exp] 74 / 2e-15 AT5G07900 171 / 7e-51 Mitochondrial transcription termination factor family protein (.1) Lus10016551 [exp] 68 / 2e-13 AT5G07900 144 / 3e-40 Mitochondrial transcription termination factor family protein (.1) Lus10040818 [exp] 65 / 3e-12 AT5G07900 129 / 2e-34 Mitochondrial transcription termination factor family protein (.1) Lus10040819 [exp] 57 / 2e-09 AT5G07900 130 / 2e-35 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G012900 [exp] 97 / 4e-23 AT5G07900 220 / 6e-68 Mitochondrial transcription termination factor family protein (.1) Potri.004G013100 [exp] 95 / 2e-22 AT5G07900 198 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.004G012400 [exp] 91 / 4e-21 AT5G07900 212 / 9e-65 Mitochondrial transcription termination factor family protein (.1) Potri.011G005100 [exp] 86 / 2e-19 AT5G07900 199 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.015G038500 [exp] 84 / 1e-18 AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1) Potri.004G013000 [exp] 84 / 2e-18 AT5G07900 193 / 1e-57 Mitochondrial transcription termination factor family protein (.1) Potri.015G038400 [exp] 81 / 1e-17 AT5G07900 237 / 1e-74 Mitochondrial transcription termination factor family protein (.1) Potri.010G022700 [exp] 81 / 2e-17 AT5G07900 220 / 5e-68 Mitochondrial transcription termination factor family protein (.1) Potri.014G133200 [exp] 81 / 2e-17 AT5G07900 436 / 3e-152 Mitochondrial transcription termination factor family protein (.1) Potri.012G046700 [exp] 80 / 3e-17 AT5G07900 241 / 5e-76 Mitochondrial transcription termination factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002881 pacid=23176888 polypeptide=Lus10002881 locus=Lus10002881.g ID=Lus10002881.BGIv1.0 annot-version=v1.0 ATGATTGAATCGATAGCAATAGCGGTAGGACGGCGGTTTGGAATTCGCTCGATTTACAGACTTGATCATCTTCCTCAATGTGAGTATCCTCCGTCCTTGA TCTTACACCTCCGGAGCTTCTCAAGCTCGTTGTCAATTACAGACGACGATGGAAGGTCTGTTACTGTCTCTTCTCTTGTAAACCAGTGTGGCATTTCAAT AGAGGACGCACTAATTTTATCAGTCTGCCCTAGAATTTTCCGCTCGAGTCTCCAGAATCAGCTGATCCCTTGCTTCCAGTTCTTGGAAGAGTATTACTAT TCCAAGGATGCAGATATGGCAGCCGTTAAATGCTACCCGCGTATACTGCATTCCAACCTTCATCAGCATGCTGTTCCTGTACTCGAAACGCTACGAGAAG CTGGAATGCGTAGCAAGTGCATCACTGGGTTCGTCGATCAGCCGTTGAAAAATCGGTGGAAGCCGGAGGTGTTTAGAAGGATGATGGCTGAGGCCACGGG ATGTCCAACCAACAAAGCTTTCTTTGCAGCTGTCATCTTGCTTACGCATATGAGCAGATCCACATGGGAGAGGAGGCATGCTGCGTATGCCAAATGGGGT TGGTCTCGGGAACTAGCTATGGATGCGTTCAGAAAATTTCCCAACTGCTTTGCCCTCTCTGTAGAGGAGATTGAAAAAAACGATGGATCTGTTTGTGAAC AAGTTTGGTTGGAAGTCGTCGTTTGTCGCTAA
AA sequence Show only first row Show all	>Lus10002881 pacid=23176888 polypeptide=Lus10002881 locus=Lus10002881.g ID=Lus10002881.BGIv1.0 annot-version=v1.0 MIESIAIAVGRRFGIRSIYRLDHLPQCEYPPSLILHLRSFSSSLSITDDDGRSVTVSSLVNQCGISIEDALILSVCPRIFRSSLQNQLIPCFQFLEEYYY SKDADMAAVKCYPRILHSNLHQHAVPVLETLREAGMRSKCITGFVDQPLKNRWKPEVFRRMMAEATGCPTNKAFFAAVILLTHMSRSTWERRHAAYAKWG WSRELAMDAFRKFPNCFALSVEEIEKNDGSVCEQVWLEVVVCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07900			Mitochondrial transcription te...		Lus10002881 [exp]	0	1
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10032176 [exp]	22.6	0.8246
AT5G64950			Mitochondrial transcription te...		Lus10029199 [exp]	37.4	0.8168
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10007430 [exp]	48.8	0.8218
AT1G51965		ABO5	ABA Overly-Sensitive 5 (.1)		Lus10006850 [exp]	59.4	0.8008
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10016246 [exp]	60.7	0.8016
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Lus10010311 [exp]	74.9	0.7807
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Lus10036393 [exp]	126.2	0.7869
AT5G15610			Proteasome component (PCI) dom...		Lus10013192 [exp]	136.2	0.7580
AT2G46290			Transducin/WD40 repeat-like su...		Lus10021857 [exp]	144.4	0.7828
AT5G41970			Metal-dependent protein hydrol...		Lus10008867 [exp]	177.7	0.7726

Compare expression of checked genes

Lus10002881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.