Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26700 315 / 3e-105 Protein kinase superfamily protein (.1) AT3G21450 174 / 7e-52 Protein kinase superfamily protein (.1) AT2G02800 172 / 3e-49 Kin2, APK2B protein kinase 2B (.1.2) AT1G79670 176 / 8e-49 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G76370 169 / 9e-49 Protein kinase superfamily protein (.1) AT5G39000 176 / 2e-48 Malectin/receptor-like protein kinase family protein (.1) AT1G21230 175 / 2e-48 WAK5 wall associated kinase 5 (.1) AT5G38990 175 / 3e-48 Malectin/receptor-like protein kinase family protein (.1) AT2G28250 172 / 3e-48 NCRK Protein kinase superfamily protein (.1.2) AT1G79620 174 / 9e-48 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041509 [exp] 314 / 1e-104 AT3G26700 469 / 4e-166 Protein kinase superfamily protein (.1) Lus10012585 [exp] 275 / 1e-89 AT3G26700 426 / 2e-149 Protein kinase superfamily protein (.1) Lus10041860 [exp] 183 / 6e-53 AT2G14440 262 / 3e-78 Leucine-rich repeat protein kinase family protein (.1) Lus10028407 [exp] 183 / 1e-52 AT2G14510 258 / 1e-76 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 175 / 7e-50 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038595 [exp] 171 / 2e-49 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10036386 [exp] 171 / 2e-48 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10003244 [exp] 176 / 3e-48 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007919 [exp] 170 / 3e-48 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G144800 [exp] 322 / 1e-107 AT3G26700 439 / 3e-154 Protein kinase superfamily protein (.1) Potri.002G237600 [exp] 305 / 3e-101 AT3G26700 445 / 2e-156 Protein kinase superfamily protein (.1) Potri.005G108300 [exp] 181 / 4e-52 AT5G54380 245 / 2e-72 THESEUS1, protein kinase family protein (.1) Potri.017G096400 [exp] 177 / 3e-51 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.010G093700 [exp] 172 / 2e-49 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G148000 [exp] 170 / 1e-48 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.010G203400 [exp] 170 / 1e-48 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.013G042500 [exp] 176 / 2e-48 AT3G04690 1036 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 175 / 3e-48 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.010G001600 [exp] 170 / 3e-48 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10002882 pacid=23176874 polypeptide=Lus10002882 locus=Lus10002882.g ID=Lus10002882.BGIv1.0 annot-version=v1.0 ATGTCAAAGGTATATGTTGCAATAGTAGCTGGAGGTGCCATAGTCGCAGTTTTACTAGTAGCATTGGCTGTTAGGATCCTCTACAAGTCGCCATGGTTTA GAAACTTCTCCAAGAGAAGTTCAGATACTGCCTCCTCTGACCCTTCTACACTTGTAGAGTGGAATAGAGGAGGTGGAGAAGGAAGAAGATCAACTTCTTC TGCATCAGGCCACCCTCTATTTGGACAGCAACACAAGGGAGGAAGGCAATTCACATTGGAAGAGTTGGCTCAAGCCACTAGGCAATTCAATGACAACAGT ATCATTGGTTATGGAAGCTTTGGTCCTGTCTACAAAGGGTTGCTTTATGACACCATTGTTGCCATCAAAAGGCGCCATGGTTCTCCTCAAGACCACTTTG TAGCTGAGGTGGCTTATCTGTCAGAAATTCGGCACCGGAATCTAGTCACCCTTCTTGGTTACTGTCAAGAGAGTGGCTATCAAATGCTGGTCTTTGAATA TGTACCAAATGGGAGCATGTTCAATCACCTTTTTGATACAGGATTGGAGACACCAACAAAGCTCGAGTTCAAGCAGAGGCTATCCATAGCTATTGGAGCA GCAAAAGGCAACCATCTGCATAGCCTGAGCCCTCATTTACAACACAAGAACTTCAAATCAACAAATGTCCTGGTGGATGAGAACTTCATAGTGAAAGTCT CCGATGCAGGGATTTCGAACCTCCTCGAAAATATGGAAGAACAAGCCGGCCCTTCTAACCCACAGTCTGGCCTCATCAATGTTTTCAGAGATCCAGAGGT TGAATCATTTGGAAGCTTCAATGAAATGAGCGATGTATACAGCTTCGGAGTGTTCCTTTTGGAGCTCATAACAGGTCATCAGGCTCAGCAAATCGAGTCA TTAGGATCCAATGAAGGCCTAATCCAATGGGTGGCGTCAAGACTGAGTAGAGACGAATTTGTGGACAGAAGAATAGTGGGGAGCTTTACAACAGATGGGA TGAGGGATGTGATAAAGCTGATGCTGAAATGCATGAGCTTTCCTGGGAAAGGACGACCAAAGATGGAAATGGTGGCTGCTGAACTTGAAAGAATTCGGGA GGAAGAAATGGCATTGACCACTGTTATGGGAGAGAGCACCACCACCATCATTAAAGGAAGTGAATTGTTCACTTGA
AA sequence Show only first row Show all	>Lus10002882 pacid=23176874 polypeptide=Lus10002882 locus=Lus10002882.g ID=Lus10002882.BGIv1.0 annot-version=v1.0 MSKVYVAIVAGGAIVAVLLVALAVRILYKSPWFRNFSKRSSDTASSDPSTLVEWNRGGGEGRRSTSSASGHPLFGQQHKGGRQFTLEELAQATRQFNDNS IIGYGSFGPVYKGLLYDTIVAIKRRHGSPQDHFVAEVAYLSEIRHRNLVTLLGYCQESGYQMLVFEYVPNGSMFNHLFDTGLETPTKLEFKQRLSIAIGA AKGNHLHSLSPHLQHKNFKSTNVLVDENFIVKVSDAGISNLLENMEEQAGPSNPQSGLINVFRDPEVESFGSFNEMSDVYSFGVFLLELITGHQAQQIES LGSNEGLIQWVASRLSRDEFVDRRIVGSFTTDGMRDVIKLMLKCMSFPGKGRPKMEMVAAELERIREEEMALTTVMGESTTTIIKGSELFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26700			Protein kinase superfamily pro...		Lus10002882 [exp]	0	1
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10011919 [exp]	10.3	0.7569
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10035993 [exp]	19.0	0.7323
AT5G22780			Adaptor protein complex AP-2, ...		Lus10043363 [exp]	20.6	0.7558
AT5G19690		STT3A	staurosporin and temperature s...		Lus10043241 [exp]	21.2	0.6925
AT1G72880			Survival protein SurE-like pho...		Lus10037627 [exp]	22.2	0.7071
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Lus10018540 [exp]	23.6	0.7160
AT4G38120			ARM repeat superfamily protein...		Lus10008299 [exp]	23.9	0.7539
AT2G38610			RNA-binding KH domain-containi...		Lus10003241 [exp]	25.5	0.6632
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10016697 [exp]	27.3	0.7269
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10031066 [exp]	28.2	0.7292

Compare expression of checked genes

Lus10002882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.