Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07900 179 / 4e-52 Mitochondrial transcription termination factor family protein (.1) AT1G21150 170 / 8e-49 Mitochondrial transcription termination factor family protein (.1) AT1G61980 137 / 3e-36 Mitochondrial transcription termination factor family protein (.1) AT1G62120 132 / 2e-34 Mitochondrial transcription termination factor family protein (.1) AT1G61970 127 / 1e-32 Mitochondrial transcription termination factor family protein (.1.2) AT1G61990 124 / 9e-32 Mitochondrial transcription termination factor family protein (.1) AT3G46950 125 / 1e-31 Mitochondrial transcription termination factor family protein (.1) AT1G61960 117 / 5e-29 Mitochondrial transcription termination factor family protein (.1) AT1G62110 114 / 1e-27 Mitochondrial transcription termination factor family protein (.1) AT1G62085 110 / 2e-26 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002881 [exp] 213 / 6e-67 AT5G07900 72 / 1e-14 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 204 / 7e-62 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 192 / 3e-57 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10040820 [exp] 186 / 7e-55 AT5G07900 221 / 2e-68 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 177 / 8e-52 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10016551 [exp] 165 / 5e-48 AT5G07900 144 / 3e-40 Mitochondrial transcription termination factor family protein (.1) Lus10040818 [exp] 155 / 2e-44 AT5G07900 129 / 2e-34 Mitochondrial transcription termination factor family protein (.1) Lus10039174 [exp] 142 / 1e-41 AT1G21150 73 / 2e-16 Mitochondrial transcription termination factor family protein (.1) Lus10040819 [exp] 139 / 2e-38 AT5G07900 130 / 2e-35 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G013000 [exp] 249 / 4e-79 AT5G07900 193 / 1e-57 Mitochondrial transcription termination factor family protein (.1) Potri.004G013100 [exp] 244 / 2e-77 AT5G07900 198 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.004G012900 [exp] 244 / 4e-77 AT5G07900 220 / 6e-68 Mitochondrial transcription termination factor family protein (.1) Potri.004G012400 [exp] 242 / 2e-76 AT5G07900 212 / 9e-65 Mitochondrial transcription termination factor family protein (.1) Potri.010G022700 [exp] 233 / 3e-73 AT5G07900 220 / 5e-68 Mitochondrial transcription termination factor family protein (.1) Potri.011G005100 [exp] 223 / 5e-69 AT5G07900 199 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.008G216200 [exp] 218 / 5e-67 AT5G07900 217 / 8e-67 Mitochondrial transcription termination factor family protein (.1) Potri.015G038400 [exp] 205 / 4e-62 AT5G07900 237 / 1e-74 Mitochondrial transcription termination factor family protein (.1) Potri.015G038500 [exp] 204 / 1e-61 AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1) Potri.014G133200 [exp] 200 / 3e-60 AT5G07900 436 / 3e-152 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10002883 pacid=23176878 polypeptide=Lus10002883 locus=Lus10002883.g ID=Lus10002883.BGIv1.0 annot-version=v1.0 ATGATTGAATCGATAGCCATAACTTTAGGACGGCGGTTTCGAATTCGCTCGATTTACAGACTTGATCATCTTCCTCAATGTGAGTATCCTCTGTCCTTGT CATTACACATCCGGCGCTTCTCAAGCTCGTCGTCGATTACAGACGACGAGGGAAAGTCTTTTACAGTCTGTTTCCTTGTAAACAAGTGCGGCATTTCATC AAAGGAAGCACTAGTAACATCCAAGTATGTTAGCTTGAAAACAGTAGAGACTCCCAACTCGGTACTGAGTTTCTTCAAACGGCATGGTTTCTCGGCCTCC CAGATTTCAAAAGTCGTGAAGCTACAGCCGAGAGTTCTTCTCTCCCAGCCAATCAAGACTCTTTCCCCCAAGCTGCAATTCCTCCGATCATTGGGATTCT CCAGCTCAGACGTTGCCCAGATCTTATCGGTCTGCCCTAGAATTTTCCACTCGAGTCTGGAGAATCAGCTGGTCCCTTGCTTCGAGTTCGTCGAAGAGTA TTATGGTTCGAAAGATGCAGCTGTGGCAGCGGTCAAACGCTGCCCGCGGATGCTGCTTTCCAGCTTTCACCGGCACACTACTCAGGTGCTCGAAACGCTA CGCCACGCTGGAATTCCTGAAAACTGCATCACTATGTTCGTCCGCAAGCAGTTGACGAACCGATGGAAGCAGGAGAAGCTGAGAAGGATCGTGGCGGATG TGACCGCAATGGGGATCGATCCAACCAAAACTGCTTTTGTTGCGGCTGTCACTTTGCTCTCGCATGTCAGCAAATCCAATTGGGAGAAGAAGCTTGCTGT GTATGCGAAATGGGGTTGGTCTCGGGAACTAGCAATGGCTGCGTTTCGAAAATTTCCCAACTGCTTTGCCCACTCTGTAGAGGAGATTGATGGGAAAATG GATCTGTTTGTGAACAAGTTGGGTTGGGAGCCTTCGTTTGTTGCGAAGAACTCGTCTGTCTTTACGTACAGCTTACGGAGGAGACTCAGGCCGAGGCTAT TTGTTCTGCAGTTTCTGGTTTCGGAAAGATTGCTCCCTTATGGTTCCGTCTCTCCAAAGCTGAGATTTTTCACCATCGGCGAAAGTGTGTTCATGGAGAA GTATGTTCTTCCTTATACTGAATCTCATAATCTTTTGGAGTTGTACTTGGAAAAGAAGTCGGAGGGTTTGTTGTCCATTCAAGAGGAGAAAAAGGTTGAC TGTTAG
AA sequence Show only first row Show all	>Lus10002883 pacid=23176878 polypeptide=Lus10002883 locus=Lus10002883.g ID=Lus10002883.BGIv1.0 annot-version=v1.0 MIESIAITLGRRFRIRSIYRLDHLPQCEYPLSLSLHIRRFSSSSSITDDEGKSFTVCFLVNKCGISSKEALVTSKYVSLKTVETPNSVLSFFKRHGFSAS QISKVVKLQPRVLLSQPIKTLSPKLQFLRSLGFSSSDVAQILSVCPRIFHSSLENQLVPCFEFVEEYYGSKDAAVAAVKRCPRMLLSSFHRHTTQVLETL RHAGIPENCITMFVRKQLTNRWKQEKLRRIVADVTAMGIDPTKTAFVAAVTLLSHVSKSNWEKKLAVYAKWGWSRELAMAAFRKFPNCFAHSVEEIDGKM DLFVNKLGWEPSFVAKNSSVFTYSLRRRLRPRLFVLQFLVSERLLPYGSVSPKLRFFTIGESVFMEKYVLPYTESHNLLELYLEKKSEGLLSIQEEKKVD C

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07900			Mitochondrial transcription te...		Lus10002883 [exp]	0	1
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10021096 [exp]	11.2	0.8875
AT1G02310		MAN1	endo-beta-mannanase 1, Glycosy...		Lus10007211 [exp]	11.4	0.8193
AT3G59670			unknown protein		Lus10008349 [exp]	15.6	0.8679
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10037161 [exp]	24.1	0.8552
AT3G49990			unknown protein		Lus10010625 [exp]	30.3	0.8395
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Lus10019439 [exp]	33.0	0.8568
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Lus10023255 [exp]	34.2	0.8602
AT2G18900			Transducin/WD40 repeat-like su...		Lus10003637 [exp]	42.9	0.8476
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10008406 [exp]	51.6	0.8461
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10021418 [exp]	56.7	0.8432

Compare expression of checked genes

Lus10002883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.