Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18580 785 / 0 FASS2, TON2, GDO, FS1, EMB40, FASS GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) AT1G54450 96 / 9e-21 Calcium-binding EF-hand family protein (.1) AT5G28850 94 / 3e-20 Calcium-binding EF-hand family protein (.1.2) AT5G28900 92 / 7e-20 Calcium-binding EF-hand family protein (.1) AT5G44090 92 / 9e-20 Calcium-binding EF-hand family protein (.1) AT1G03960 85 / 9e-18 Calcium-binding EF hand family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033964 [exp] 509 / 5e-177 AT5G18580 520 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Lus10022907 [exp] 91 / 3e-19 AT5G44090 737 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10008247 [exp] 90 / 5e-19 AT5G44090 774 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10024917 [exp] 90 / 7e-19 AT5G44090 751 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10003628 [exp] 89 / 1e-18 AT5G44090 775 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10008193 [exp] 87 / 5e-18 AT5G28850 768 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10027963 [exp] 86 / 9e-18 AT5G28850 771 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10021174 [exp] 84 / 5e-17 AT5G28850 804 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10011811 [exp] 83 / 8e-17 AT5G28850 797 / 0.0 Calcium-binding EF-hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G215300 [exp] 812 / 0 AT5G18580 830 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Potri.010G022300 [exp] 808 / 0 AT5G18580 835 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Potri.019G019500 [exp] 96 / 4e-21 AT5G28850 885 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.005G227100 [exp] 96 / 6e-21 AT5G44090 772 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.013G047300 [exp] 94 / 2e-20 AT5G28850 887 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.002G035800 [exp] 93 / 5e-20 AT5G44090 814 / 0.0 Calcium-binding EF-hand family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002884 pacid=23176879 polypeptide=Lus10002884 locus=Lus10002884.g ID=Lus10002884.BGIv1.0 annot-version=v1.0 ATGATCCCCAAAGAAAGAGCCCACCGCAGCCCTCCACGGCGTGGGCCGCCGTCCTCAATGCTGTGGGTGCGGAATCTCAGACGGTATATTGGATCCGGTG CCGGGCTTGGATCCGAAGCTCTAATGGAGCTTGAGACGAAGAGAATTTTGCTGGATATCTTCAAGGACAAGCAGCAAAAGAGCGCGGAAGCTGGTACGAT CCCTAGTTTCTATAAGAAGAAACCGGAAGATGGATCCATCAGTCATAGGGTGCAGAGACTGGCTAAGTATCGATTTTTAAAGAAGCAATCAGATCTTCTA CTGAATGCGGATGACTTGGATGCCATGTGGGTTTGCTTGAGAGAAAATTGTGTTATCGATGATGCTACAGGTGCAGAGAAGATGAATTACGAAGATTTTT GTCATATTGCTTCTGTATGTACGGAGCAAATAGGTCCCAAATGTCGAAGGTTTTTCAGCCCATCCAATTTCATGAAATTTGAGAAAGATGAATCAGGAAG AATTGCCATTCTCCCCTTTTATCTCTATGTGATGCGCACGGTTTCGCTCACACAAGCAAGGATAGATATGAGTGAGCTTGATGAAGATTCTGATGGCTTC CTTCAACCCCATGAAATGGAGGCCTATATACGAGGTCTTATACCCAATTTAGCACAATTGCGGGATATGCCTGGAGTATTTATTCAAATGTACTGTCGCA TTGCAGCACATAAATTTTTCTTCTTTTGTGATCCTCACAGGCGAGGGAAAGCTTGCATTAAAAAGGTGCTTCTCAGCAACTGCCTGCAGGAACTAATGGA GTTGCACCAGGAAACTGAGGAGGAAGTGACAGACACTGAGCAAGCTGAAAACTGGTTCTCTCTGACATCTGCACAGCGCATATGTGATATGTTCCTTGAT CTTGATAAAGATAGAAATGGGACGTTGAGTAAACAAGAGCTTCGGGAATATGCAGATGGCACATTGACAGAAATCTTTATTGAAAGAGTATTTGATGAAC ATGTCCGCCGTGGCAAGAGTGGAACTGGAAATGCACGAGAGATGGATTTTGAAAGTTTCCTAGACTTTGTTCTGGCTCTGGAAAACAAAGATACCCCGGA AGGGTTGACTTATTTGTTTCGTTGTCTTGATCTTCAAGGACGGGGATTCCTTACAACAGCTGATATTCACTCCCTTTTCAGAGACGTGCATCATAAATGG ATTGAGGGTGGGAACTATGAGCTGTGTATTGAGGATGTGAGAGACGAGATATGGGACATGGTAAAGCCAGGTGACCCTCTGAGGATAACGCTTGCTGATC TTCTAGGGTGTAAACAAGGGGGTACAGTTGCTAGCATGCTGATAGATGTAAGGGGTTTCTGGGCCCATGATAATAGGGAAAATCTTCTCCAGGAAGAGGA AGAGCCTGGAGAGGAAGAATAA
AA sequence Show only first row Show all	>Lus10002884 pacid=23176879 polypeptide=Lus10002884 locus=Lus10002884.g ID=Lus10002884.BGIv1.0 annot-version=v1.0 MIPKERAHRSPPRRGPPSSMLWVRNLRRYIGSGAGLGSEALMELETKRILLDIFKDKQQKSAEAGTIPSFYKKKPEDGSISHRVQRLAKYRFLKKQSDLL LNADDLDAMWVCLRENCVIDDATGAEKMNYEDFCHIASVCTEQIGPKCRRFFSPSNFMKFEKDESGRIAILPFYLYVMRTVSLTQARIDMSELDEDSDGF LQPHEMEAYIRGLIPNLAQLRDMPGVFIQMYCRIAAHKFFFFCDPHRRGKACIKKVLLSNCLQELMELHQETEEEVTDTEQAENWFSLTSAQRICDMFLD LDKDRNGTLSKQELREYADGTLTEIFIERVFDEHVRRGKSGTGNAREMDFESFLDFVLALENKDTPEGLTYLFRCLDLQGRGFLTTADIHSLFRDVHHKW IEGGNYELCIEDVRDEIWDMVKPGDPLRITLADLLGCKQGGTVASMLIDVRGFWAHDNRENLLQEEEEPGEEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18580		FASS2, TON2, GD...	GORDO, FASS 1, EMBRYO DEFECTIV...		Lus10002884 [exp]	0	1
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Lus10016093 [exp]	3.0	0.8136
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10014041 [exp]	4.6	0.7225
					Lus10013650 [exp]	6.8	0.7971
					Lus10013649 [exp]	6.9	0.7683
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10017700 [exp]	8.2	0.7651
					Lus10024480 [exp]	13.0	0.7223
AT5G44960			F-box/RNI-like/FBD-like domain...		Lus10015246 [exp]	14.1	0.7479
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10005190 [exp]	14.4	0.7194
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10041034 [exp]	14.7	0.7117
					Lus10039764 [exp]	15.9	0.7404

Compare expression of checked genes

Lus10002884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.