Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25120 379 / 2e-126 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT3G48280 378 / 2e-126 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT5G25140 376 / 1e-125 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT5G25130 373 / 2e-124 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1) AT5G25180 370 / 5e-123 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT3G26280 367 / 6e-122 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT1G13080 365 / 4e-121 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G48310 362 / 4e-120 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G26270 362 / 1e-119 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) AT3G26210 361 / 2e-119 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026252 [exp] 606 / 0 AT5G25120 383 / 2e-123 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10018263 [exp] 561 / 0 AT5G25140 393 / 5e-132 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) Lus10042419 [exp] 510 / 1e-178 AT3G48280 343 / 3e-114 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10030708 [exp] 511 / 5e-178 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10012767 [exp] 504 / 2e-175 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10042815 [exp] 496 / 5e-172 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10028926 [exp] 489 / 6e-169 AT3G26330 382 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10013194 [exp] 480 / 1e-165 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10023709 [exp] 458 / 6e-159 AT5G25120 251 / 1e-78 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G365100 [exp] 495 / 8e-172 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 491 / 3e-170 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 489 / 2e-169 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 487 / 2e-168 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 487 / 2e-168 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 486 / 2e-168 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 486 / 4e-168 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.011G130850 [exp] 481 / 3e-166 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 479 / 1e-165 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365300 [exp] 425 / 2e-145 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10002885 pacid=23176883 polypeptide=Lus10002885 locus=Lus10002885.g ID=Lus10002885.BGIv1.0 annot-version=v1.0 ATGCCTATGAGCTTGAGCATGGAGAAGTTCATCAACTCAGCATCTTTTTTTCGAACACCCGTCCCCGATAATATCCCTGTAGTCTTCCTTGTCGCATTTT CGATAATCCTTTTTACCTTAATCATCTTCCGCAGTAAATCCAAATCTACCGCTGGCAATTCAAACCTTCCGCCGGGGCCATGGAAGCTCCCTATGATAGG CAATCTCCACCAGCTCGTCGGCCACGAACCTCATCGACGACTTAAAGATTTGGCACATAAATACGGTCCAGATGTGATGCATATGCAGCTCGGGGAACTC CCTCACATCATAATTTCCTCACCGGAAGCGGCTGAACAGGTGATGAAAACTCACGACTTAGCTTTCGCTTCAAGGCCAACTTTCCTTGCCACAGATATCA TCTTCTACCAGAGCAACGACATAGCCTTTGCGCCTTACGGAGAGCACTGGAGACAGATGCGAAAGATCTCCGTGTTGGAGCTATTCAGCTCCAAACGCGT TCTCTCTTTCCGTGCAATTAGGGAAGAAGAAGTATCCAATCTCATTCAACTTATTTCTCGCAACGCAACAGTTAGTGATCAACCGGTGAATCTGACTGCC ATGATGTCAAAGCTTAGTAGTTGTGTCACATCCAGGGCAGCATTTGGTAAAGTACAAGAGCTAGACAGTGATTTTATGCTCATTATGGATAACTTGTCGT ACGCTATGTCCGGTTTTAAACTTTCGGACCTGTATCCATCCCTCAAGTTTCTTCCTCGTCTGAGTGGATACAGAGCAAATCTAGAGAAGATGCATAAAGC ATTAGATTGGATACTCGAGCAAATAATCGACGAACATAAATCCAAAAAAATATTGGGATTTAGCACTGATGATCAAGACCATCATGAAGATCTCGTTGAT GTCCTTCTGAATCTTCAGGATAACAACAATCTTGGAGTCCATATATCAATGGATGCCATAAAAGCAGTCACTTTAGAATTGTTCTTTGCGGGCATCGACA CATCGTCAACGACAATAGAATGGATCATGTCAGAAATGATCAAACATCCGAGCTCGTTGGCGAAAGCTCAAGAAGAGGTTAGACAAGTCTGCATCAAAAA CAGAGATGTGAAAGAGACATCTCTTGATCAACTAACCTACTTGGACATGGTTATTGCTGAAACTTTAAGATTGCATCCTCCAATTCCTTTACTTGTTCCA AGAGAAACTAGGGACAAGGTGGTGCTCAATGGTTTTGATATCCCAATCAAAACTAAAGTGATTGTCAATGCTTGGGCGATTAATCGAGATTCTCGTTACT GGGCAGATGCAGAGAAATTCATTCCTGAAAGATTCATAGATTGTTCAACGGACTTTAAGGGGACTAATTTCCATTTCATTCCGTTCGGTGCTGGAAGGAG GATGTGCCCTGGAATGTCGTTTGGAATGGCTACTGTTAAGCTTACTCTTGCTAGTTTGCTCTTCCATTTTGACTGGAAGCTTCCTGCGGAAATGAAACCA GAGAGTATTGATATGAGAGAAACCTTTGGGATGTCTCTTAGAAGAAAATGTGCATTACATCTCATTCCTGTTCCCTGCACTACTATGCCTTGA
AA sequence Show only first row Show all	>Lus10002885 pacid=23176883 polypeptide=Lus10002885 locus=Lus10002885.g ID=Lus10002885.BGIv1.0 annot-version=v1.0 MPMSLSMEKFINSASFFRTPVPDNIPVVFLVAFSIILFTLIIFRSKSKSTAGNSNLPPGPWKLPMIGNLHQLVGHEPHRRLKDLAHKYGPDVMHMQLGEL PHIIISSPEAAEQVMKTHDLAFASRPTFLATDIIFYQSNDIAFAPYGEHWRQMRKISVLELFSSKRVLSFRAIREEEVSNLIQLISRNATVSDQPVNLTA MMSKLSSCVTSRAAFGKVQELDSDFMLIMDNLSYAMSGFKLSDLYPSLKFLPRLSGYRANLEKMHKALDWILEQIIDEHKSKKILGFSTDDQDHHEDLVD VLLNLQDNNNLGVHISMDAIKAVTLELFFAGIDTSSTTIEWIMSEMIKHPSSLAKAQEEVRQVCIKNRDVKETSLDQLTYLDMVIAETLRLHPPIPLLVP RETRDKVVLNGFDIPIKTKVIVNAWAINRDSRYWADAEKFIPERFIDCSTDFKGTNFHFIPFGAGRRMCPGMSFGMATVKLTLASLLFHFDWKLPAEMKP ESIDMRETFGMSLRRKCALHLIPVPCTTMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10002885 [exp]	0	1
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	4.0	0.9357
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004346 [exp]	5.5	0.9207
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002894 [exp]	5.5	0.9127
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	7.5	0.9229
AT3G14590		NTMCTYPE6.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10042475 [exp]	9.4	0.9013
AT5G57770			Plant protein of unknown funct...		Lus10015501 [exp]	9.5	0.9029
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	9.6	0.9144
					Lus10022643 [exp]	11.0	0.8723
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10035135 [exp]	11.5	0.9055
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10002663 [exp]	12.5	0.9117

Compare expression of checked genes

Lus10002885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.