Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 347 / 4e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 311 / 3e-104 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G59530 310 / 9e-104 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 303 / 2e-101 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03410 303 / 1e-100 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 297 / 1e-98 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 296 / 3e-98 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G43450 294 / 1e-97 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G61400 294 / 2e-97 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 293 / 3e-97 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000426 [exp] 500 / 2e-178 AT1G06620 412 / 5e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001118 [exp] 500 / 2e-178 AT1G06620 412 / 5e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002894 [exp] 443 / 8e-155 AT1G06620 369 / 2e-125 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001108 [exp] 424 / 8e-149 AT1G06620 362 / 2e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002892 [exp] 422 / 2e-147 AT1G06620 381 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001109 [exp] 421 / 2e-147 AT1G06620 379 / 4e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017701 [exp] 392 / 1e-136 AT1G06620 346 / 2e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10019435 [exp] 393 / 3e-136 AT1G06620 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 372 / 4e-128 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073166 [exp] 350 / 1e-119 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 348 / 1e-118 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 345 / 1e-117 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 322 / 3e-108 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 314 / 3e-105 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.011G156200 [exp] 304 / 2e-101 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 276 / 1e-90 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 270 / 8e-88 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 267 / 5e-87 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G136000 [exp] 267 / 7e-87 AT1G06620 314 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10002888 pacid=23144925 polypeptide=Lus10002888 locus=Lus10002888.g ID=Lus10002888.BGIv1.0 annot-version=v1.0 ATGGGCTCCATCGCAATTGCAACCCAAGAGGATTATGATCTAGTTGAAGAGATGAAGTCATTTGGCGAAACAAAAGCTGGAGTGAAAGGATTGGCAGATT TGGGTATCACAGAAATCCCTCGAATCTTCCACACAGCACCCCATTTGTTAGACGAAGGACTTCCCTTCTCACCAGAGGACCCAAACTTCATTGTCCCAAC AATAGACTTGCAGGGAGGCCAAGATCATCCCGAAAGGCGGAACGAAATCGTCGAAAAAATCAGGAATGCTGCTGAAAAATGGGGTTTTTTCCAAATAGTC CACCATGGAGTTCCAGTTAACATAATGGAAGAGATGATTCCTGGAGTCCACAGGTTCTTCAACCTGGACGTTGAGGAAAAGAAAGAGTTTTTTTATGAGC AGGACATGAAGAAGAAAGTAATTTATTCAAGCAACTCCAATCTGCGCACTGCAAACTGGAGGGACTCCGTCTTCTACTTCATGGCACCAGATCCCCCGGA GGCAGAGGAATTGCCGAAATGCACCAGAGAAATCGTGCCGGAATATTCAGGAGAGATGATGAAATTGGGTGATTTGCTTTTCCAGTTGCTGTCTGAGGGT TTGGGTCTGTCCTCAAACCATTTGAAGGAGATGGATTGTTTGAATGTGTTGGGAGTAGCCGGAAATTACCATCCACCTTGTCCTCAGCCACAACTAACTC TTGGATCTACACAACATGTGGATCTGGATTTCCTCTCTGTTATTTTACAGGATCATTTTGGAGGTCTTCAAATTCTTCATCACGACTGTTGGGTTGACGT CCCTTTTGTGTCGGGCGGTTTGGTGGTCAACATTGGTGATATGCTTCAGCTGATATCGAATGATAAGTTTACAAGTGTAGTGCATAGAGTCCGAGTGAAA AATGTTGGTCCAAGAGTATCAGTTGCAGCATTTTTTGGCCATGGAGCTTCATCATCTACAAGGAAGTATGGACCCATAAAAGAAATATTGACAGAAGAAA ATCCTCAGATATACCAAGAAACAACAATTCAGGAGTTGTTTCTTCGAACTCACAAACCTGGATTTGATGGTAAGTCTGTTTTACCCCAATTTAAGCTCTG A
AA sequence Show only first row Show all	>Lus10002888 pacid=23144925 polypeptide=Lus10002888 locus=Lus10002888.g ID=Lus10002888.BGIv1.0 annot-version=v1.0 MGSIAIATQEDYDLVEEMKSFGETKAGVKGLADLGITEIPRIFHTAPHLLDEGLPFSPEDPNFIVPTIDLQGGQDHPERRNEIVEKIRNAAEKWGFFQIV HHGVPVNIMEEMIPGVHRFFNLDVEEKKEFFYEQDMKKKVIYSSNSNLRTANWRDSVFYFMAPDPPEAEELPKCTREIVPEYSGEMMKLGDLLFQLLSEG LGLSSNHLKEMDCLNVLGVAGNYHPPCPQPQLTLGSTQHVDLDFLSVILQDHFGGLQILHHDCWVDVPFVSGGLVVNIGDMLQLISNDKFTSVVHRVRVK NVGPRVSVAAFFGHGASSSTRKYGPIKEILTEENPQIYQETTIQELFLRTHKPGFDGKSVLPQFKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002888 [exp]	0	1
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041223 [exp]	4.2	0.8919
AT1G78780			pathogenesis-related family pr...		Lus10039018 [exp]	7.1	0.9016
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10001894 [exp]	13.2	0.8477
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010700 [exp]	14.1	0.8725
AT2G34070		TBL37	TRICHOME BIREFRINGENCE-LIKE 37...		Lus10015309 [exp]	20.5	0.8826
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10012575 [exp]	24.0	0.8766
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	24.7	0.8831
					Lus10018472 [exp]	25.7	0.8638
AT5G51700		ATRAR1, RPR2, P...	Required for Mla12 resistance ...		Lus10031107 [exp]	28.3	0.8734
AT2G43590			Chitinase family protein (.1)		Lus10010862 [exp]	28.3	0.8632

Compare expression of checked genes

Lus10002888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.