Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 381 / 9e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 372 / 3e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G59530 365 / 2e-125 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 357 / 2e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G04350 354 / 5e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03410 351 / 2e-119 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 349 / 7e-119 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G43450 343 / 1e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06645 342 / 4e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G61400 341 / 9e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001108 [exp] 509 / 0 AT1G06620 362 / 2e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001109 [exp] 494 / 3e-176 AT1G06620 379 / 4e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000426 [exp] 488 / 7e-174 AT1G06620 412 / 5e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001118 [exp] 488 / 7e-174 AT1G06620 412 / 5e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10019435 [exp] 464 / 3e-164 AT1G06620 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002888 [exp] 460 / 1e-162 AT1G06620 384 / 7e-133 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 447 / 3e-157 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 445 / 5e-157 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 446 / 6e-157 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073166 [exp] 405 / 6e-141 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 398 / 2e-138 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 392 / 1e-135 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 365 / 3e-125 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 352 / 3e-120 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073100 [exp] 341 / 9e-116 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 330 / 1e-111 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 308 / 2e-102 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 299 / 3e-99 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 297 / 1e-98 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10002892 pacid=23144922 polypeptide=Lus10002892 locus=Lus10002892.g ID=Lus10002892.BGIv1.0 annot-version=v1.0 ATGGCCCCCTTGGTAAGCGCCTTAGAAGCATTTGATCGACTTGCAGCGCTAGATGCATTCCACAAAACGAAAGCCGGAGTGAAAGGGCTGGTGGATTTGG GGATCACAGAGATCCCACAGCTGTTTCATGCGCCGAAGCATTTGCTGGACAAGGGGATTCCTTTCTCCCCGGAGGACCCAGAGTTCATTTTCCCAATCAT AGATCTGCAGGGGTGTGCTACGGGGGAAGACCCTGAGAAACGAAAGCATATTGTTGAGAGAATCAGGGAAGCGTCTGAGAACTGGGGCTTCTTCCAAATC GTGAACCACGGAGTCCCCGGAACCATCTTGGACGAGATGATCGCAGGGACCCACAGGTTCTTCGAACAAGACGTTGAGCTCAAGAAGGAGTTCTACGGGC AGGACGCTAGCAAGAAGGTTCTTTACTCCAGCAACTCTAATTTGTATACTGCAACATCGGCAGCAAACTGGAGGGACTCCATTGTTTATCAATTGACACC TGACCCGCCAGCGCCCGAGGAAATACCGGCTTGCTGCAGGGACATTGTGCCAAAGTATTCAGAGGAAATCCTGAAACTGGGGGATTTCTTGTTCCAGTTG CTATCTGAGGCTTTGGGTTTGTCTCCGAATTACCTGAAAGAGATGGACTGTGTGGAACAGCTGGGTGGAGTGGCCTGTCATTATCATCCAGTTTGTCCTC AGCCAGATCTCACTCTGGCAACTACGGGTCATGCTGATCTGGATTTTATTACCGTCCTTTTACAAGATCATATCGGTGGCCTTCAAGTTCTTCGCAAGGG TCGTTGGGTGGATGTCCCGTATATGAAGGATGCCATAGTCATCAACATTGGAGAAATGTTTCAGCTAATATCGAATGACAAGTTCACTAGCGCGGAGCAT AGAGTTCTAGCGAAAAGCATTGGCCCAAGAATTTCTGTTGCATCGTTTTTCGGAAATGGGTTCTCGCTGTCTTCGAGAATGTATGGACCCATAAAGGAGT TGTTATCGGAAGACAACCCTCCAAAATACAAGGAAATCACCATTCAAGATTTCTTTGCCCTGTCCTTCAAAAATGGCATTGGCAACTCTGCTCTCTCACT CCTTAAGCTTTGA
AA sequence Show only first row Show all	>Lus10002892 pacid=23144922 polypeptide=Lus10002892 locus=Lus10002892.g ID=Lus10002892.BGIv1.0 annot-version=v1.0 MAPLVSALEAFDRLAALDAFHKTKAGVKGLVDLGITEIPQLFHAPKHLLDKGIPFSPEDPEFIFPIIDLQGCATGEDPEKRKHIVERIREASENWGFFQI VNHGVPGTILDEMIAGTHRFFEQDVELKKEFYGQDASKKVLYSSNSNLYTATSAANWRDSIVYQLTPDPPAPEEIPACCRDIVPKYSEEILKLGDFLFQL LSEALGLSPNYLKEMDCVEQLGGVACHYHPVCPQPDLTLATTGHADLDFITVLLQDHIGGLQVLRKGRWVDVPYMKDAIVINIGEMFQLISNDKFTSAEH RVLAKSIGPRISVASFFGNGFSLSSRMYGPIKELLSEDNPPKYKEITIQDFFALSFKNGIGNSALSLLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002892 [exp]	0	1
AT3G29250		AtSDR4	short-chain dehydrogenase redu...		Lus10022562 [exp]	2.0	0.9339
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10020987 [exp]	2.6	0.8963
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10016334 [exp]	3.5	0.9333
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10012767 [exp]	3.9	0.9310
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001109 [exp]	4.5	0.9154
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10004443 [exp]	6.5	0.8985
					Lus10039737 [exp]	11.9	0.8311
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001118 [exp]	16.9	0.8733
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000426 [exp]	18.0	0.8730
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016211 [exp]	29.0	0.8407

Compare expression of checked genes

Lus10002892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.