Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 164 / 8e-46 HXXXD-type acyl-transferase family protein (.1) AT5G47950 156 / 5e-43 HXXXD-type acyl-transferase family protein (.1) AT3G30280 147 / 2e-39 HXXXD-type acyl-transferase family protein (.1) AT1G24420 146 / 5e-39 HXXXD-type acyl-transferase family protein (.1) AT4G15390 142 / 1e-37 HXXXD-type acyl-transferase family protein (.1) AT1G24430 136 / 2e-35 HXXXD-type acyl-transferase family protein (.1) AT5G23970 133 / 2e-34 HXXXD-type acyl-transferase family protein (.1) AT5G47980 125 / 2e-31 HXXXD-type acyl-transferase family protein (.1) AT4G15400 111 / 1e-26 HXXXD-type acyl-transferase family protein (.1) AT3G48720 81 / 3e-16 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012759 [exp] 446 / 2e-154 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 445 / 2e-154 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 439 / 1e-151 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10016353 [exp] 385 / 1e-130 AT3G26040 201 / 1e-59 HXXXD-type acyl-transferase family protein (.1) Lus10042994 [exp] 370 / 6e-125 AT3G26040 184 / 3e-53 HXXXD-type acyl-transferase family protein (.1) Lus10025867 [exp] 325 / 1e-108 AT3G26040 155 / 2e-43 HXXXD-type acyl-transferase family protein (.1) Lus10036077 [exp] 261 / 3e-82 AT1G24420 188 / 2e-54 HXXXD-type acyl-transferase family protein (.1) Lus10036126 [exp] 258 / 6e-81 AT3G26040 189 / 6e-55 HXXXD-type acyl-transferase family protein (.1) Lus10001107 [exp] 223 / 1e-67 AT3G26040 193 / 2e-56 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G124156 [exp] 280 / 5e-90 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 277 / 9e-89 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 277 / 9e-89 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 276 / 2e-88 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 275 / 6e-88 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 275 / 6e-88 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 235 / 2e-72 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 234 / 3e-72 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 228 / 2e-69 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 219 / 2e-66 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10002893 pacid=23144927 polypeptide=Lus10002893 locus=Lus10002893.g ID=Lus10002893.BGIv1.0 annot-version=v1.0 ATGGAGCTATCGGTGATCTCAGTTGAGAATATCAAACCCTTTTCAGGTGCAGCAACCCATGAATGGAAGCCATATAGCCTTAGCATGCTTGATCAGCTCA TGCCCTCTGTTTACTCTCCACTCATCTACTTCTACCCTTTGAAATCCAACCACAATACTAGCAATCTTAAATTGGTATCCTCCAATCTTAAATCATCACT CTCCAAGACACTCGACCCCTTCCACCCTCTATCCGGTCGGGTGAACGACCAAAACATGTTCATCCACAACTTCAACCAAGGAGTCCCATTCACCGAAACT CGAATTAGAGGACAAACTCTCTTCGATTTCCTACAGCCACCGAAAATGGAGTTGCTCAATAACTTGCTTCCATTGGAGCCCTTATGTCCCCTCCCAACGA ACGGTCCACAAGTCGCCGTCCAACTCAACACATTCGACTGCGGTGGGATGGCCCTCGGATTGAGCTTCTACCACCGCATCGTCGATGGAGCCACGCTCAG CGCCTTCCTCAAGACTTGGGCCGCAACTGCAAACCCGGCCGGTAACTTAAAAGCGGTGCATCCGGATTTAGACATAGCATCCTCTGTTTTCCCACCTCGC GACTCCATCCCACCGCAGAAGACTCCGACCACAGAGGAAATGAGCCAGCTCATCAGGACCAAGCCGAGAAGATTTGTGTTTCGGAACGACGCAGTTTCAG CGCTGAGATCGATTGCAAGGAGCGATCAAGTTGAGAACCCAAGTCGAACGGAGGCGCTGTTCGCTTTCATTTGGGAATCCACCATGCGGGCAGCTACTGA AACCGGATCTCCCAAGCTGCTGCATCTTTTACAAGCGGTTAATATAAGGCCGCGAATGGGTCAAAAACTGTCCAAGAATTCCATCGGGAATCTTACGACG ACCCCGATTGTTTCGTGCAATGAAAGTGCCGGAATCAAGGAGATGGTGGCACTTATAAGAAAAGGAGTCGATGGGATTGACGAGAAGTATCTGAATTCCA TCTCCCGTGACGAATGGTTTTCAGGTGTTACAGGGGAGGACCTGGAGATTAGTCATCAACAACAACAGCAGCAGCAGCTTCTAGTTTGTTCAAGCTGGGC TGGATTTGGGTATAACGATTTCGACTTCGGTCTGGGAAACCCCATTTGGACTGGTTTGTATGGACGTGCTACTGGTGGTGCTTCCTCAATTCTTCTAAAG GAGGTAGGTGCTCGGAGCAACGGGAATAATAATGGAATTGAGGCATGGATAACTCTGGATGAGAATGTCATGGCTGCTCTTGAACGTAATCCTGACTTTT TGAAGTTTGCTTCTCCTAACCCTCTTATCGTCTTTAACTGA
AA sequence Show only first row Show all	>Lus10002893 pacid=23144927 polypeptide=Lus10002893 locus=Lus10002893.g ID=Lus10002893.BGIv1.0 annot-version=v1.0 MELSVISVENIKPFSGAATHEWKPYSLSMLDQLMPSVYSPLIYFYPLKSNHNTSNLKLVSSNLKSSLSKTLDPFHPLSGRVNDQNMFIHNFNQGVPFTET RIRGQTLFDFLQPPKMELLNNLLPLEPLCPLPTNGPQVAVQLNTFDCGGMALGLSFYHRIVDGATLSAFLKTWAATANPAGNLKAVHPDLDIASSVFPPR DSIPPQKTPTTEEMSQLIRTKPRRFVFRNDAVSALRSIARSDQVENPSRTEALFAFIWESTMRAATETGSPKLLHLLQAVNIRPRMGQKLSKNSIGNLTT TPIVSCNESAGIKEMVALIRKGVDGIDEKYLNSISRDEWFSGVTGEDLEISHQQQQQQQLLVCSSWAGFGYNDFDFGLGNPIWTGLYGRATGGASSILLK EVGARSNGNNNGIEAWITLDENVMAALERNPDFLKFASPNPLIVFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10002893 [exp]	0	1
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007562 [exp]	1.4	0.9457
AT1G19230			Riboflavin synthase-like super...		Lus10034890 [exp]	1.7	0.9362
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10028736 [exp]	3.3	0.9088
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10043468 [exp]	3.6	0.9071
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	3.9	0.9281
					Lus10024121 [exp]	4.7	0.9366
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10027251 [exp]	4.9	0.9347
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10009513 [exp]	5.7	0.9010
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10004480 [exp]	6.2	0.8983
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10039524 [exp]	8.3	0.8938

Compare expression of checked genes

Lus10002893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.