Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 324 / 7e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59530 299 / 3e-98 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 296 / 5e-97 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 293 / 9e-96 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G43450 291 / 2e-95 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 283 / 8e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G25450 281 / 2e-91 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 281 / 3e-91 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G03410 277 / 3e-89 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 276 / 3e-89 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000426 [exp] 444 / 4e-155 AT1G06620 412 / 5e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001118 [exp] 444 / 4e-155 AT1G06620 412 / 5e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002888 [exp] 421 / 4e-146 AT1G06620 384 / 7e-133 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001109 [exp] 418 / 9e-145 AT1G06620 379 / 4e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001108 [exp] 392 / 1e-134 AT1G06620 362 / 2e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10002892 [exp] 369 / 1e-125 AT1G06620 381 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10019435 [exp] 354 / 8e-120 AT1G06620 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017701 [exp] 351 / 4e-119 AT1G06620 346 / 2e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 348 / 3e-117 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073232 [exp] 330 / 3e-110 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 328 / 1e-109 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 322 / 6e-107 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 295 / 1e-96 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 278 / 7e-90 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073100 [exp] 264 / 1e-84 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.017G135800 [exp] 262 / 1e-83 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G045000 [exp] 253 / 2e-80 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G136000 [exp] 249 / 7e-79 AT1G06620 314 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G083100 [exp] 238 / 2e-74 AT1G04350 287 / 5e-95 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10002894 pacid=23144926 polypeptide=Lus10002894 locus=Lus10002894.g ID=Lus10002894.BGIv1.0 annot-version=v1.0 ATGGCTTCTACTACTACTGCTAATGCTGCTGCCACCCTCGATTATGATCTACTTGCTGAGCTCAAGGCATTCGACGAAACAAAAGCCGGAGTGAAAGGGC TGGCCGATTCGGGAATCACAGAGGTCCCTCGAATCTTCCACATGCCTTCACATTTGCTGGACGAAGGACTTCCATTTGCAGCCGACGACCCAAACTTCAT CTTCCCAATCATAGACCTGCAAGGTGGCCAAGATGACCCCGAGGCGAGAAAGAAGATTGTCAAAAGAATCAGAGACGCGTCCGAAAATTGGGGATTCTTT CAGATAGTGAACCACGGAGTCCCTGTAAACATCATGGAGGAGATGATGGCCGGTGTCCACAGGTTCTTCGACTTAGACGTCGAGGAAAAGAAGGAGCATT TCAGCGTCGACCTTTCCAAGAAGGTTATATCCTCCAGCAACTCGAATGTGTACAACGCACCGGCTGCGAACTGGAGGGATTCCATCCTCTGCTTTATGGC GCCTGATCCTCCGAAGCCAGAGCAATTGCCGGCCTGCTGTAGCGAAATCATGACCGAGTATACAGGGGAGATGATGAAAGTGGGGGAATTGCTATTCCAG TTGCTGTCTGAGGGTTTGGGTCTCTCGTCAAACCATTTGAAGGAAATGGAGGATTGTTTGGAAGTGGTGGGATTGGGGTGTAATTATCTTCCACCTTGTC CTCAGCCAAAACTCACTCTGGGAACCATCCAACATACGGATACATGTATGCTTACCGTTATTTTGCAGGATCATCTCGGAGGTCTTCAAATTCTTCATCG TGGCCATTGGGTTGATGTGCCTTTTATGCCTGGAGGTTTGGTGGTCAACATTGGAGATATCCTTCAGCTGATATCAAATGATAAGCTTACAAGTGTAGTG CATAGGGTTCGAGTAAAAGAAGTTGGACCAAGAGTTTCAGTTGCTACTTTTTTCGGCCATGCATCCTCTTCGTCAAGCAAGACATATGGACCCATAAATG ATGTTGTTGGAAAAGCATATAGTGCAAGGGATAGGCCAGAGAAATCAAGGAGAGTGGGTCATGGTGGGTTTGGAGTTAAAGCAAAATGGGTGTATAAACT ATTTTCTTTTGGTTCCCAACAAACAACGAATCAGAATATTCCCGAGTACTTTATTACCTTTCAATCGCAAATCTTAGGTCTTCTTCCTAACTCAGGGATT GGCTTGACTCCGGAATTGGAGGCGGTGAAGAATATGCTCAACAGCCAAGGATTTGGCAATAACATAGCGCCACTGGATACCAACACTCCAACGGACATGG ATGAAGATGAAATGGTAAATGAAGATCAGAGGGGCAATCAAGATGATGAAAATGACGGTGATGAGTAG
AA sequence Show only first row Show all	>Lus10002894 pacid=23144926 polypeptide=Lus10002894 locus=Lus10002894.g ID=Lus10002894.BGIv1.0 annot-version=v1.0 MASTTTANAAATLDYDLLAELKAFDETKAGVKGLADSGITEVPRIFHMPSHLLDEGLPFAADDPNFIFPIIDLQGGQDDPEARKKIVKRIRDASENWGFF QIVNHGVPVNIMEEMMAGVHRFFDLDVEEKKEHFSVDLSKKVISSSNSNVYNAPAANWRDSILCFMAPDPPKPEQLPACCSEIMTEYTGEMMKVGELLFQ LLSEGLGLSSNHLKEMEDCLEVVGLGCNYLPPCPQPKLTLGTIQHTDTCMLTVILQDHLGGLQILHRGHWVDVPFMPGGLVVNIGDILQLISNDKLTSVV HRVRVKEVGPRVSVATFFGHASSSSSKTYGPINDVVGKAYSARDRPEKSRRVGHGGFGVKAKWVYKLFSFGSQQTTNQNIPEYFITFQSQILGLLPNSGI GLTPELEAVKNMLNSQGFGNNIAPLDTNTPTDMDEDEMVNEDQRGNQDDENDGDE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002894 [exp]	0	1
AT5G46230			Protein of unknown function, D...		Lus10001891 [exp]	1.4	0.9307
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	3.0	0.9414
AT5G67070		RALFL34	ralf-like 34 (.1)		Lus10001132 [exp]	3.5	0.9183
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10002885 [exp]	5.5	0.9127
AT3G05390			unknown protein		Lus10004494 [exp]	5.5	0.9189
AT5G05340			Peroxidase superfamily protein...		Lus10008581 [exp]	6.3	0.9058
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10005865 [exp]	6.7	0.8977
AT5G20260			Exostosin family protein (.1)		Lus10005186 [exp]	8.8	0.9019
AT5G24070			Peroxidase superfamily protein...		Lus10004804 [exp]	9.4	0.9036
AT2G17080			Arabidopsis protein of unknown...		Lus10014447 [exp]	10.9	0.9065

Compare expression of checked genes

Lus10002894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.