Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22760 229 / 2e-65 CPP SOL1 Tesmin/TSO1-like CXC domain-containing protein (.1) AT4G14770 226 / 2e-63 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) AT3G22780 214 / 4e-59 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G04850 196 / 3e-53 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT2G20110 129 / 3e-31 CPP Tesmin/TSO1-like CXC domain-containing protein (.1.2) AT5G25790 125 / 2e-30 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT4G29000 125 / 1e-29 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G16160 104 / 1e-23 CPP Tesmin/TSO1-like CXC domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002033 [exp] 1328 / 0 AT3G22780 248 / 4e-71 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10006604 [exp] 216 / 8e-60 AT4G14770 446 / 1e-147 TESMIN/TSO1-like CXC 2 (.1) Lus10039358 [exp] 184 / 7e-48 AT3G22760 367 / 9e-113 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10043225 [exp] 133 / 3e-32 AT4G29000 520 / 2e-179 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011693 [exp] 131 / 1e-31 AT4G29000 330 / 3e-105 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10023656 [exp] 130 / 3e-31 AT4G29000 491 / 2e-168 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10009494 [exp] 128 / 2e-30 AT4G29000 335 / 2e-106 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011103 [exp] 110 / 7e-25 AT4G29000 463 / 8e-157 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10020590 [exp] 71 / 2e-13 AT4G14770 102 / 3e-25 TESMIN/TSO1-like CXC 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G251200 [exp] 551 / 0 AT3G22780 188 / 6e-50 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G030000 [exp] 513 / 1e-169 AT4G14770 207 / 1e-56 TESMIN/TSO1-like CXC 2 (.1) Potri.010G083400 [exp] 243 / 3e-69 AT4G14770 504 / 6e-170 TESMIN/TSO1-like CXC 2 (.1) Potri.008G156100 [exp] 238 / 3e-67 AT4G14770 522 / 1e-176 TESMIN/TSO1-like CXC 2 (.1) Potri.005G051100 [exp] 225 / 3e-62 AT4G14770 300 / 1e-90 TESMIN/TSO1-like CXC 2 (.1) Potri.001G173600 [exp] 218 / 5e-60 AT3G22780 160 / 5e-41 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.013G038301 [exp] 142 / 7e-36 AT3G22780 196 / 1e-55 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.001G184800 [exp] 131 / 4e-32 AT2G20110 286 / 3e-90 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.006G160400 [exp] 125 / 1e-29 AT4G29000 518 / 2e-178 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G083000 [exp] 121 / 3e-29 AT4G29000 410 / 9e-139 Tesmin/TSO1-like CXC domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03638 [flax] [poplar] TCR Tesmin/TSO1-like CXC domain, cysteine-rich domain
Representative CDS sequence Show only first row Show all	>Lus10002895 pacid=23148591 polypeptide=Lus10002895 locus=Lus10002895.g ID=Lus10002895.BGIv1.0 annot-version=v1.0 ATGGATTCTCCTGAAGTAACCAAAACCACCACCGCTGCATCTTCTGCCACCGTCACTTCCCCTATCGTCGTTCAAGAGTCTCCATTCTCGAACTATGTGA GCAATCTATCTCCTATAGGGCCTGTTAAGAGTTCTCGAATATCACAAGGATATGCACACCTCAGTTCTCCTCCCCTCGTCTTCACTTCGCCGCATGTGGT ACCTCAACGTGAAGCAAGTTTGTTGCGAAGGCTTCAGTGTCCTCAGACGTCTAGTTCACAAACAGCGAAAGTTGGTGGGAAAGCGTTTGCTGATATTCCA CCTGATTTAGAGAAATGTGATTCCTATTTTGGTAGGAGGTTTATTATTGGCAGTCAGAAAGATAGTGATCGTATTAGCTGCACAAAGGAGCTCCGCGACA GTCCTTCAGGGTGTGTTGACGAGTACTTATCAGAAGCAGTGGATGCAGAGTGTGCAGACTGCGTTGATTCAACCGGCCTGATCAGGGAGACATCTGCTGA TCTGATTGAATCATCAGAATGTGGTTTAGTAAACTTACAGGAAAAGAAGTTGCAGTCTGGAACTGATAAGGAGGTGATAAATTTCGAGATTAGGCCTACT GACACTGGACACGACAGAAGTACCGGTCTACCACCATCCGATGACTGCAATAATAGCACGTCACAAATGCAATTGGACCTTGTTTCTAATGAAGTGCAAT CAGGAAATTGCTCCGTTAAGGCATGTCAATTGCATCGTGGCGTGAGTAGACGCTGCCTTCAATTTGGAGAAGGCCAAGGGGTTGGAAAAGGTAGTGTGAA TGTGATGGACTCGGGATTACCCTTCTCTGCGGGGATGGAAAGTTCAAAACTGTCAGATTTAGGCATTGCTGCCCCTACCAGGAAAACTCAAATGATCAAC TTGTCCAGGGTGTTAGCATCCATACGTCCTCCTAACGACAATGCAAAGACCATTTTGTCTATTTCAAAACCGTCTGGTATCGGATTGCATCTAAATAGCA TTCTTAACGCCTCGCCAATGGGTTGTACTGGCAGTGAAACCATCAACAGTCAGTCAGTGGATAACGAAGCATGTTCTGCTAAACCGTCAAGCTTAGTCGA TAAATTTCATGGTACTGTTGGAGACAGAATACTTGAAAACCAGGCTGCACCTGTTTCTGTGTCTTACACCACAGATTCTTTCCACACTACGAAATCATTG ACTATAATTCAGTCATTAGAGTCATTTGAGCCAAACACAACCCCACAGGAGAAGAGGCCACTAGACTCGGAGCAAAATGAATCAAGTCCTAAAAAGAAAA GGAAGAAACTTACCCCTGATGGTGGTGATGATTGCAAACGTTGCAATTGTAAGAAGACTAAATGCTTGAAACTATACTGTGATTGTTTCGCCTCTGGGAA TTATTGTTCAGAAGCTTGTAGTTGCCAAGGTTGCTTTAACAAGCCCGAGTATGAAGATACTGTTCTACAGACACGCCAACTAATCGAATCACGTAACCCA CTCGCTTTTGCTCCGAAGGTTGTACATCATGCATCCAGAGTTCCTGCCGCGATTGGGGCAGATGTGAACAGGACAACTCCGTCATCTGCAAGGCACAAGA GGGGATGCAACTGCAAGAAGTCAATGTGTCTTAAAAAATATTGTGAATGCTATCAGGCAAATGTTGGATGCTCGAGTGGTTGCCGATGTGAAGGGTGCAA GAATGTCTTTGGTATGAAAAATGGTTTTGCTATTGCTGAAGAAATTACGAACAGCACAACCAGCAAGGATCTAATAGAGAACACAGCTGATGACAAAGTG GTTTACAGCGATGATCGTGTGCCTGCAGAGTTGTATGACGCACAAAGCCCGGCACCATTTACACCCCAGCTCCAATTGTCCGAGCGTAATAGAGACGGCG CGCCAAAGTCCCGACTTTTTCCCACAAAATATCTACCATCGCCACTGTCAGATATCTCCACGCTTCAATCTGTAGAGAAAAGTGTAGACGTTCTCTCTGT AGGCTCCTCCGGCCAGGAGATGGAGTACAGCATTTCCGGAATCGGTGATGATGTATGTGATCGAAATGCTTCCTCCTCGTCTGCATCTACAACCATGGAG TTGGCTAATATTTCTTCACGTCCACTGCAACTTCTCCGATGGCGTGGCTCCCCAATAACTCCAATGCCGAACTTGGCGGAGATCGGTAAGAGTATAAAAG GGCCGGATTCCGTCCAGAAGATGAGTGATCTGTTAATGGCAGATGACTCCCCTGAGATATTGAAAGAGACTTGTAGTCCAATTCAATCTGTGAAAGCAAC GTCTCCAAACAAAAAACGGGTTTGTCCACCTCATGCACATCCCAAAAGTATCCATGGTTTCGGGTCATTTTCTTCAGGAAGCTTTAGAAGTGGAAGGAAG TTCGTACTGAAGTCAGTCCCTTCTTTTCCTCCTCTCACTCCTTGCTTGGGTTCCAAGGTTAACAAGAACAAGGAGCAAGAGAAATAG
AA sequence Show only first row Show all	>Lus10002895 pacid=23148591 polypeptide=Lus10002895 locus=Lus10002895.g ID=Lus10002895.BGIv1.0 annot-version=v1.0 MDSPEVTKTTTAASSATVTSPIVVQESPFSNYVSNLSPIGPVKSSRISQGYAHLSSPPLVFTSPHVVPQREASLLRRLQCPQTSSSQTAKVGGKAFADIP PDLEKCDSYFGRRFIIGSQKDSDRISCTKELRDSPSGCVDEYLSEAVDAECADCVDSTGLIRETSADLIESSECGLVNLQEKKLQSGTDKEVINFEIRPT DTGHDRSTGLPPSDDCNNSTSQMQLDLVSNEVQSGNCSVKACQLHRGVSRRCLQFGEGQGVGKGSVNVMDSGLPFSAGMESSKLSDLGIAAPTRKTQMIN LSRVLASIRPPNDNAKTILSISKPSGIGLHLNSILNASPMGCTGSETINSQSVDNEACSAKPSSLVDKFHGTVGDRILENQAAPVSVSYTTDSFHTTKSL TIIQSLESFEPNTTPQEKRPLDSEQNESSPKKKRKKLTPDGGDDCKRCNCKKTKCLKLYCDCFASGNYCSEACSCQGCFNKPEYEDTVLQTRQLIESRNP LAFAPKVVHHASRVPAAIGADVNRTTPSSARHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCEGCKNVFGMKNGFAIAEEITNSTTSKDLIENTADDKV VYSDDRVPAELYDAQSPAPFTPQLQLSERNRDGAPKSRLFPTKYLPSPLSDISTLQSVEKSVDVLSVGSSGQEMEYSISGIGDDVCDRNASSSSASTTME LANISSRPLQLLRWRGSPITPMPNLAEIGKSIKGPDSVQKMSDLLMADDSPEILKETCSPIQSVKATSPNKKRVCPPHAHPKSIHGFGSFSSGSFRSGRK FVLKSVPSFPPLTPCLGSKVNKNKEQEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Lus10002895 [exp]	0	1
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041886 [exp]	3.5	0.9736
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10020813 [exp]	3.5	0.9643
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028433 [exp]	5.3	0.9691
AT5G15510			TPX2 (targeting protein for Xk...		Lus10010706 [exp]	6.5	0.9638
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041887 [exp]	8.5	0.9641
AT2G36200			P-loop containing nucleoside t...		Lus10021340 [exp]	9.5	0.9641
AT5G25590			Protein of unknown function (D...		Lus10022116 [exp]	11.7	0.9517
AT2G43990			unknown protein		Lus10008351 [exp]	12.0	0.9479
AT3G27120			P-loop containing nucleoside t...		Lus10041563 [exp]	12.2	0.9094
AT3G10310			P-loop nucleoside triphosphate...		Lus10042045 [exp]	13.0	0.9621

Compare expression of checked genes

Lus10002895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.