Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15680 164 / 4e-52 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT5G25490 164 / 5e-52 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT2G26695 105 / 2e-29 Ran BP2/NZF zinc finger-like superfamily protein (.1) AT2G17975 56 / 1e-09 zinc finger (Ran-binding) family protein (.1) AT1G70650 46 / 4e-06 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT1G48570 45 / 7e-06 zinc finger (Ran-binding) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002032 [exp] 245 / 5e-84 AT3G15680 182 / 3e-59 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10030054 [exp] 107 / 5e-30 AT2G26695 196 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10019433 [exp] 107 / 3e-29 AT2G26695 198 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10043289 [exp] 106 / 5e-29 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10033023 [exp] 105 / 1e-27 AT2G26695 202 / 4e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10009049 [exp] 51 / 1e-07 AT1G48570 365 / 7e-123 zinc finger (Ran-binding) family protein (.1) Lus10009681 [exp] 50 / 1e-07 AT1G48570 334 / 3e-111 zinc finger (Ran-binding) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G251300 [exp] 186 / 5e-61 AT3G15680 167 / 1e-53 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.018G029900 [exp] 184 / 3e-60 AT3G15680 176 / 4e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.003G061300 [exp] 177 / 8e-58 AT3G15680 161 / 2e-51 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.001G172700 [exp] 168 / 6e-54 AT3G15680 170 / 7e-55 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.018G066900 [exp] 124 / 3e-36 AT2G26695 177 / 2e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.006G149900 [exp] 115 / 1e-33 AT2G26695 177 / 2e-58 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.012G046500 [exp] 51 / 1e-07 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) Potri.015G038200 [exp] 47 / 2e-06 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.005G115100 [exp] 45 / 9e-06 AT2G17975 328 / 4e-113 zinc finger (Ran-binding) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Lus10002896 pacid=23148597 polypeptide=Lus10002896 locus=Lus10002896.g ID=Lus10002896.BGIv1.0 annot-version=v1.0 ATGAACAGACCAGGGGACTGGAGCTGCAGGGCATGCGCGCACCTCAACTTCCAGAGGAGGGATTCATGCCAGCGTTGCGGCGACCCCAAGCCAGCTTCTG GCGCCGGTGATTTTATCTATGGCGGATTTGGAGGAGGAAGAGGCGGCGGCGGGGTGTTGCCTCCGGCAGCGTCGTTCGGTTTTGCTGGGCCGGACGTTAG GCCCGGTGATTGGTATTGCACAGTTGGCAACTGCGGGGCCCACAACTTCGCCAGCAGGTCCAGCTGCTTCAAGTGCGCCGCTAACAAAGACGAGTCTGGT GGCGGCGGAGGCGCCGCCGACATGTCTCGCATGAGAGGCGCATTTGGATTTGGTGGCGGCGTTGGTGGGAGCAGCCGCGCTGGGTGGAAATCTGGTGACT GGATTTGCACTAGAGCCGGGTGCAACGAGCACAACTTTGCTAGCAGGATGGAGTGCTACCGGTGCAATGCGCCGAGGGACTTGTCGGCTTCAGGCGGCAA CATGTCTGCCTATTAA
AA sequence Show only first row Show all	>Lus10002896 pacid=23148597 polypeptide=Lus10002896 locus=Lus10002896.g ID=Lus10002896.BGIv1.0 annot-version=v1.0 MNRPGDWSCRACAHLNFQRRDSCQRCGDPKPASGAGDFIYGGFGGGRGGGGVLPPAASFGFAGPDVRPGDWYCTVGNCGAHNFASRSSCFKCAANKDESG GGGGAADMSRMRGAFGFGGGVGGSSRAGWKSGDWICTRAGCNEHNFASRMECYRCNAPRDLSASGGNMSAY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002896 [exp]	0	1
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10002213 [exp]	1.4	0.9256
AT1G68430			unknown protein		Lus10034103 [exp]	1.4	0.9287
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002032 [exp]	2.0	0.9239
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10035783 [exp]	3.0	0.9246
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10002579 [exp]	4.7	0.8426
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10016566 [exp]	5.0	0.9139
AT1G69160			unknown protein		Lus10036813 [exp]	6.6	0.8690
AT1G68430			unknown protein		Lus10003042 [exp]	6.9	0.9131
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Lus10025340 [exp]	8.4	0.8733
AT1G70280			NHL domain-containing protein ...		Lus10032158 [exp]	8.9	0.8839

Compare expression of checked genes

Lus10002896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.