Plant FIBer expression Database

Lus10002897 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G25500 362 / 2e-122 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002031
[exp]
807 / 0 AT5G25500 365 / 1e-123 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G251400
[exp]
411 / 2e-141 AT5G25500 394 / 4e-135 unknown protein
PFAM info
Representative CDS sequence
>Lus10002897 pacid=23148584 polypeptide=Lus10002897 locus=Lus10002897.g ID=Lus10002897.BGIv1.0 annot-version=v1.0
ATGATTGTTCGTCAGCCACTAACGTTCATCTCAAGAAAAACGGAAATAGTTGCATCACCGCTGTTCTACAGGACGACAGTGAAAGATGTTTCTTCGAAGC
TGGGACTGTATCATTCTTCTTGTTCTTCAGGAGGAGAAGAAATCCTCCCGCCTTTCGAATGGTATGAGAAGACTTTCCCCAAGCTGAGGAAATTGACGCA
ACAGTTACGCAACGTGGATTTCGTCGACGGGACGGCTGTTTGCATAAACGACGACGTTTCGTTGCCGTTGATGATGAACGCCAGAGTTGTGCAAAAGATC
ACTACTTTGAAGTCGCTTGTCAGGGTGTTCATAGGGTCGCCGTTAGTGCAGCAGAAGATTAAGGAGAACATGGCGGCATTGGGAGGAGGAGAAGGAGGAA
AACCAATTGGGTGTTTCAGAAAATCATACGAAAGGGAAGCCATGATTGTGGATTCACTGACTAAAGTTGGTAACTTTCTCAAGGTATCAGCACAGCAGAG
GAAAGTTGTTCGACTCACGATTTGCCCACAGGTAACCCACCATCGAATTTGGACAGGTTCCCTTAAGGAGGTACTCAATGAGTTGAAGTTGGAGATGGAT
CATGGCATTGGTACTAGCATGGCGCCTCAGATAGTCACTAGCTGTTTAAACTTCCTGGTCGATTCCGACACTCGTTTCGAAGAAGACGGTGATTCGTCGT
GTTCTTCATGGATGCGGCTCTCTTCTGCTCCGAAGAAGAAGCAAGCCACTGATTCAAGCATGAATCGAACGTGGGAGGACATTCTCGAGATGTTCGACGA
TCTGATCAAGTGTTTACGGTACGAGAAGGAGGAACCGCTCCTGCGCGTCTCGAAGAAGCTCGAGGTCATGAAGGAAGGGCTGGCACAGATCAAGGATGTG
GTGATGGACCGAGGAATCGGATACAGAGAAGCTAAGCATCAGGAAAGCTTAGTGCAGAAGAAGCTATCGAGTACGCTGGGACATTCTTCTCCTTGCTTGT
TCACACTTTTGCTGTATTACCTCTATGGACAGGTGAGGGACATTGAAGTTGATCTCAGTGGAGGTCTGTATCAGAGTGATGATGGGGATAAGAAGAGTTA
CTGCTTGAGAATGGGGAGGATTCTGAGCTCGGACGAGGAGCGGATGGTTATGAGAGGTGTGAAGCATTTGAATAGAGTGCTTGGGCTGTTCAAGTTTGTC
TGGGAAACTGCTGAGATGGATGGTGTTCTTGAGCTGCAAGGGCATTTGTTCTGTGTTGATGCCGAGGATCGAACAATCACGTATAGAGGGAATTCGTTCT
TGTTGCATGGAATCAGCTTTTGA
AA sequence
>Lus10002897 pacid=23148584 polypeptide=Lus10002897 locus=Lus10002897.g ID=Lus10002897.BGIv1.0 annot-version=v1.0
MIVRQPLTFISRKTEIVASPLFYRTTVKDVSSKLGLYHSSCSSGGEEILPPFEWYEKTFPKLRKLTQQLRNVDFVDGTAVCINDDVSLPLMMNARVVQKI
TTLKSLVRVFIGSPLVQQKIKENMAALGGGEGGKPIGCFRKSYEREAMIVDSLTKVGNFLKVSAQQRKVVRLTICPQVTHHRIWTGSLKEVLNELKLEMD
HGIGTSMAPQIVTSCLNFLVDSDTRFEEDGDSSCSSWMRLSSAPKKKQATDSSMNRTWEDILEMFDDLIKCLRYEKEEPLLRVSKKLEVMKEGLAQIKDV
VMDRGIGYREAKHQESLVQKKLSSTLGHSSPCLFTLLLYYLYGQVRDIEVDLSGGLYQSDDGDKKSYCLRMGRILSSDEERMVMRGVKHLNRVLGLFKFV
WETAEMDGVLELQGHLFCVDAEDRTITYRGNSFLLHGISF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G25500 unknown protein Lus10002897
[exp]
0 1
AT2G03880 REME1 required for efficiency of mit... Lus10001617
[exp]
1.7 0.9205
AT1G63270 ABCI1, ATNAP10 ATP-binding cassette I1, non-i... Lus10022692
[exp]
3.2 0.9154
AT3G55010 EMB2818, ATPURM... EMBRYO DEFECTIVE 2818, phospho... Lus10024142
[exp]
4.9 0.9183
AT1G69210 Uncharacterised protein family... Lus10026674
[exp]
5.4 0.8691
AT1G04480 Ribosomal protein L14p/L23e fa... Lus10022881
[exp]
5.5 0.9173
AT5G43790 Pentatricopeptide repeat (PPR)... Lus10039388
[exp]
8.4 0.9050
AT1G57540 unknown protein Lus10035345
[exp]
9.4 0.8789
AT4G21065 Tetratricopeptide repeat (TPR)... Lus10000117
[exp]
10.4 0.8859
AT1G22490 bHLH bHLH094 basic helix-loop-helix (bHLH) ... Lus10000332
[exp]
11.4 0.8725
AT1G77940 Ribosomal protein L7Ae/L30e/S1... Lus10012057
[exp]
14.5 0.9084

Lus10002897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.