Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11280 268 / 1e-92 unknown protein AT1G80200 114 / 1e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002030 [exp] 339 / 6e-120 AT5G11280 323 / 2e-113 unknown protein Lus10036085 [exp] 144 / 4e-40 AT1G80190 253 / 1e-80 partner of SLD five 1 (.1) Lus10026797 [exp] 96 / 3e-24 AT5G11280 121 / 1e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G251600 [exp] 291 / 1e-101 AT5G11280 327 / 6e-115 unknown protein Potri.003G061800 [exp] 171 / 1e-50 AT1G15410 387 / 4e-132 aspartate-glutamate racemase family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002898 pacid=23148592 polypeptide=Lus10002898 locus=Lus10002898.g ID=Lus10002898.BGIv1.0 annot-version=v1.0 ATGGTTCTGTTAAAACAATGGGTGCCATGTCGATTAGGGATGTGTACATCACCGATTCACGTTACCTCTTCGCAATTGATCGCTAGCGATATCTTTCCTG TGCCGGTCGTGAAAGCCCTCCTCTATCCCGGCGCTGTAGTGAATAGCCTTGTAGTGAAAAGAACAGTTCCCAGTTGGGATAGCTTGCTTGATATCTATAA CTTGACCACTATAAAGCATGCCTCTGCTGTAACGGATCTCCAGCGCCTAGAGGTCCTTGCTGGAAGCTACTTCTCAGTAGCAGGAGCACTGGTAGGCATT CTAAAACCCGGGAGGATGAGCATGTTCGGAACGCTGCTGATACTCTGGGGGCTTATCAAGGAAGGGATCTTGGGGAAGCCGGTGAACACCGATCCTACTA AATCAATCTACGTCTACCCAACGATCGTGCTGGCTGTAGTTTGCGCATTCTCGTCGGTTAAGTACGACATGAAGAAGGTTACTGCAAAGAAGAGCGTTCC TAGACCCATCGCAACACCTTTACAGAGCTCTTCGAAGTCGAAGCTGAGATGA
AA sequence Show only first row Show all	>Lus10002898 pacid=23148592 polypeptide=Lus10002898 locus=Lus10002898.g ID=Lus10002898.BGIv1.0 annot-version=v1.0 MVLLKQWVPCRLGMCTSPIHVTSSQLIASDIFPVPVVKALLYPGAVVNSLVVKRTVPSWDSLLDIYNLTTIKHASAVTDLQRLEVLAGSYFSVAGALVGI LKPGRMSMFGTLLILWGLIKEGILGKPVNTDPTKSIYVYPTIVLAVVCAFSSVKYDMKKVTAKKSVPRPIATPLQSSSKSKLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11280			unknown protein		Lus10002898 [exp]	0	1
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	6.7	0.8973
AT4G00860		AT0ZI1, ATOZI1	Arabidopsis thaliana ozone-ind...		Lus10012194 [exp]	7.2	0.8302
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040527 [exp]	9.9	0.8927
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10037545 [exp]	12.6	0.8894
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10021159 [exp]	13.7	0.8870
AT3G07090			PPPDE putative thiol peptidase...		Lus10038168 [exp]	15.1	0.8714
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040528 [exp]	16.7	0.8836
AT3G12050			Aha1 domain-containing protein...		Lus10021072 [exp]	16.7	0.8780
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10017533 [exp]	17.3	0.8239
AT4G22580			Exostosin family protein (.1)		Lus10004341 [exp]	17.7	0.8810

Compare expression of checked genes

Lus10002898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.