Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11270 145 / 7e-41 OCP3 overexpressor of cationic peroxidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002029 [exp] 348 / 2e-120 AT5G11270 209 / 8e-65 overexpressor of cationic peroxidase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G251700 [exp] 161 / 5e-47 AT5G11270 208 / 1e-64 overexpressor of cationic peroxidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10002899 pacid=23148588 polypeptide=Lus10002899 locus=Lus10002899.g ID=Lus10002899.BGIv1.0 annot-version=v1.0 ATGGAACGAGCAATTGGATCAGACCGAATTTTCACCACCGGACAGTGTAAGCCGGCGCTGAATCTGCTTCTCCAGCGTTCGTCTACTGGCCGGGGTTCTT CTTCAGTCGCTTACTCTCGCTGTCGGAACCAAAATTCAGCTGTTACTTCCTCATCCAAGGGAAAGAGGAAAAGTTTGCCTCCGGAAGATGATATAGATGA AGATGCCTTCGATTCCCTATTCGAGAACGATGATGATTCGTCTCAACTTGATGAGGATGACTACGGTGAAATAGACGAAGAGGATCTTCAGAGGCTACAG CTTGAGTTAGAGGAAGCATTCGGTGTTGATGGCGATGATGATGACGATGATGGAGATTATGATGAGGACATGATCAGTTCATCTGGAGATTATGTTGAGG AAGGCGCCAGTTCTGAGGAAGTGAAAAATCTGGCGGGAGATCTCTGCCTTGAGAGGGGAGTTGTTCTCGAGTTGCTTCGGAATCCCCCTCCGAGTCTTGT GATGATGAGTGCTTCATTACCAGATGAACCTGAGCCAGTTCTTCTTCCACTAGTGCAACGAACGATACCAATCGAGACTGAAGTTGAGACAGCAGCTACC GAAGAAGAAGAAGAAGAAGAAGAACGTGCTGTGAAAGATGAGAAATTGCCGGTTCATGATATGTTTCAGAAATGGAATGCTCAAAAGAGATTGAAGAAAG TCCTTGCTCAAACCCTTGAGAGAGTTTACAGAAGAACCAAGAGACCTACCAACACAATGGTTAGCAGCATTGTGCATGTGACCAACTTGCCGAGGAAAAG AGTGGTGCAATGGTTCGAAGATAAACGCATAGAAGAAGGCGTCCCTGAACAACGGCTTCCTTATCGAAGGTCCATTCGTGAAACTGCCTCTTCTAAATGA
AA sequence Show only first row Show all	>Lus10002899 pacid=23148588 polypeptide=Lus10002899 locus=Lus10002899.g ID=Lus10002899.BGIv1.0 annot-version=v1.0 MERAIGSDRIFTTGQCKPALNLLLQRSSTGRGSSSVAYSRCRNQNSAVTSSSKGKRKSLPPEDDIDEDAFDSLFENDDDSSQLDEDDYGEIDEEDLQRLQ LELEEAFGVDGDDDDDDGDYDEDMISSSGDYVEEGASSEEVKNLAGDLCLERGVVLELLRNPPPSLVMMSASLPDEPEPVLLPLVQRTIPIETEVETAAT EEEEEEEERAVKDEKLPVHDMFQKWNAQKRLKKVLAQTLERVYRRTKRPTNTMVSSIVHVTNLPRKRVVQWFEDKRIEEGVPEQRLPYRRSIRETASSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11270		OCP3	overexpressor of cationic pero...		Lus10002899 [exp]	0	1
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10032529 [exp]	3.0	0.9272
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10041957 [exp]	8.2	0.9086
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10033083 [exp]	8.4	0.8963
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10022018 [exp]	9.9	0.9083
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10042890 [exp]	12.7	0.8965
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004551 [exp]	13.0	0.9010
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10006828 [exp]	14.0	0.9046
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10023746 [exp]	15.5	0.8734
					Lus10006087 [exp]	16.6	0.9022
AT2G39580			unknown protein		Lus10005958 [exp]	19.1	0.8651

Compare expression of checked genes

Lus10002899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.