Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11260 152 / 2e-47 bZIP TED5, HY5 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G17609 84 / 5e-21 bZIP HYH HY5-homolog (.1.2.3.4) AT3G56660 42 / 7e-05 bZIP BZIP49 basic region/leucine zipper motif protein 49 (.1) AT2G40950 41 / 0.0002 bZIP BZIP17 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002028 [exp] 192 / 4e-63 AT5G11260 182 / 5e-59 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10038995 [exp] 40 / 0.0004 AT2G40950 421 / 2e-137 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10027290 [exp] 40 / 0.0004 AT2G40950 429 / 2e-140 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G029500 [exp] 176 / 7e-57 AT5G11260 185 / 2e-60 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.006G251800 [exp] 171 / 5e-55 AT5G11260 143 / 6e-44 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.010G004200 [exp] 80 / 7e-19 AT3G17609 132 / 1e-39 HY5-homolog (.1.2.3.4) Potri.016G032400 [exp] 40 / 0.0005 AT2G40950 498 / 9e-167 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10002900 pacid=23148587 polypeptide=Lus10002900 locus=Lus10002900.g ID=Lus10002900.BGIv1.0 annot-version=v1.0 ATGCAAGAACAAGCTACCAGCTCAGCTGCAGCTAACTCTTTGCCTTCCAGTAGCGAGAGATCTTCCAGCTCCGCTCTTCAGCTCGAAGTCAAAGAAGGAA TGGAGAGCGACGATGAGATCAGGAGAGTGCCGGAGATGGGGGGCGAGCCGGCGGGTGCGTCCGGGTCGGGTCGGAACGCGGCGGCGACGGTGGGGAAAGA CCGTGGTGGTCATCAGGGCTCCGGCGAAGGTACGAGAAAGCGAGGGAGAAGTCCGGCGGACAAAGAGAACAAGCGACTCAAACGGTTGCTGAGGAACAGA GTATCGGCGCAGCAAGCTCGGGAGAGGAAGAAAGCGTATCTGAGCGAGCTGGAGGTGAGAGTTAAAGATTTGGAGAAGAAGAACTCGGAGCTTGAGGAAC GGCTCTCCACTCTGCAGAATGAGAACCAGATGCTCAGACAAATACTGAAGAACACAACAGCAAGCAAAAGATCAGGAGGGAATATCAGTGGTGCCAAAGA GGATGGATCTTTATGA
AA sequence Show only first row Show all	>Lus10002900 pacid=23148587 polypeptide=Lus10002900 locus=Lus10002900.g ID=Lus10002900.BGIv1.0 annot-version=v1.0 MQEQATSSAAANSLPSSSERSSSSALQLEVKEGMESDDEIRRVPEMGGEPAGASGSGRNAAATVGKDRGGHQGSGEGTRKRGRSPADKENKRLKRLLRNR VSAQQARERKKAYLSELEVRVKDLEKKNSELEERLSTLQNENQMLRQILKNTTASKRSGGNISGAKEDGSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11260	bZIP	TED5, HY5	REVERSAL OF THE DET PHENOTYPE ...		Lus10002900 [exp]	0	1
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Lus10004645 [exp]	4.4	0.7883
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10036548 [exp]	4.5	0.7184
AT1G61930			Protein of unknown function, D...		Lus10002073 [exp]	23.1	0.7319
AT5G27660			Trypsin family protein with PD...		Lus10017093 [exp]	23.3	0.7405
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10024680 [exp]	36.6	0.7161
AT5G43180			Protein of unknown function, D...		Lus10025134 [exp]	56.9	0.6731
AT4G37250			Leucine-rich repeat protein ki...		Lus10014098 [exp]	76.5	0.6567
AT5G28830			calcium-binding EF hand family...		Lus10015916 [exp]	79.9	0.6780
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10025967 [exp]	82.0	0.6756
AT2G23440			unknown protein		Lus10009347 [exp]	84.7	0.6491

Compare expression of checked genes

Lus10002900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.