Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29250 172 / 1e-56 Alba DNA/RNA-binding protein (.1) AT2G34160 171 / 4e-56 Alba DNA/RNA-binding protein (.1) AT3G04620 145 / 2e-45 DAN1 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002027 [exp] 212 / 3e-72 AT2G34160 193 / 6e-65 Alba DNA/RNA-binding protein (.1) Lus10019423 [exp] 181 / 8e-60 AT2G34160 208 / 1e-70 Alba DNA/RNA-binding protein (.1) Lus10043279 [exp] 181 / 8e-60 AT2G34160 208 / 1e-70 Alba DNA/RNA-binding protein (.1) Lus10005531 [exp] 149 / 5e-47 AT3G04620 194 / 2e-64 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) Lus10006564 [exp] 149 / 6e-47 AT3G04620 189 / 2e-62 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) Lus10022212 [exp] 98 / 2e-26 AT2G34160 107 / 4e-30 Alba DNA/RNA-binding protein (.1) Lus10019424 [exp] 89 / 2e-21 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1) Lus10021222 [exp] 64 / 1e-13 AT2G34160 75 / 1e-17 Alba DNA/RNA-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G029300 [exp] 184 / 2e-61 AT1G29250 180 / 1e-59 Alba DNA/RNA-binding protein (.1) Potri.006G252000 [exp] 182 / 2e-60 AT1G29250 164 / 2e-53 Alba DNA/RNA-binding protein (.1) Potri.005G056000 [exp] 152 / 1e-48 AT3G04620 177 / 8e-58 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) Potri.013G042900 [exp] 152 / 3e-48 AT3G04620 179 / 2e-58 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0441 [flax] [poplar] AlbA PF01918 [flax] [poplar] Alba Alba
Representative CDS sequence Show only first row Show all	>Lus10002901 pacid=23148607 polypeptide=Lus10002901 locus=Lus10002901.g ID=Lus10002901.BGIv1.0 annot-version=v1.0 ATGGAGGTGATTACCCAACGAGTGAAGAACTTGAATGTCGCCGCCGCCGATTCAGCTCCAGCTTACCTGAAGAACAGAATCCAAGTCTCGAACACCAAGA AGCCTCTCTACTTCTACGTCAATCTCGCCAAGAGGTATATGCAGCAGTTCAACGAAGTGGAGCTTTCTGCTCTGGGGATGGCGATCGCCACTGTTGTTAC TGTTGCTGAGATCTTGAAGAACAACGGATTTGCAGTCGAGAAGCGGATAATGACCTCTACTGTTGATCTGAGGGAGGATTCAGCTGCACGTCCGATGCCA AAACCAAAGATTGAGATAATGCTGGGGAAGTCGGAGAAGTTCGATGAATTGATTGCTGCTGCTGCTGCTAACGAGGAAGAGAACGATGAGTAG
AA sequence Show only first row Show all	>Lus10002901 pacid=23148607 polypeptide=Lus10002901 locus=Lus10002901.g ID=Lus10002901.BGIv1.0 annot-version=v1.0 MEVITQRVKNLNVAAADSAPAYLKNRIQVSNTKKPLYFYVNLAKRYMQQFNEVELSALGMAIATVVTVAEILKNNGFAVEKRIMTSTVDLREDSAARPMP KPKIEIMLGKSEKFDELIAAAAANEEENDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002901 [exp]	0	1
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10000421 [exp]	3.9	0.9211
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10005615 [exp]	4.9	0.9082
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10027668 [exp]	7.2	0.9157
AT3G02080			Ribosomal protein S19e family ...		Lus10033532 [exp]	7.5	0.9000
AT5G10745			unknown protein		Lus10026240 [exp]	9.9	0.8686
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10027260 [exp]	12.4	0.9117
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010986 [exp]	12.5	0.8816
AT3G59650			mitochondrial ribosomal protei...		Lus10010559 [exp]	13.5	0.8633
AT2G33820		ATMBAC1	Mitochondrial substrate carrie...		Lus10013998 [exp]	14.0	0.8726
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	14.3	0.9022

Compare expression of checked genes

Lus10002901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.