Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32400 488 / 4e-173 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G20240 206 / 4e-63 Mitochondrial substrate carrier family protein (.1) AT4G01100 159 / 3e-45 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G51050 162 / 4e-45 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT2G37890 153 / 5e-43 Mitochondrial substrate carrier family protein (.1) AT5G61810 152 / 9e-43 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT5G01500 150 / 2e-41 TAAC thylakoid ATP/ADP carrier (.1) AT3G53940 149 / 2e-41 Mitochondrial substrate carrier family protein (.1) AT3G51870 148 / 1e-40 Mitochondrial substrate carrier family protein (.1) AT4G26180 143 / 1e-39 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002026 [exp] 674 / 0 AT4G32400 525 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10030076 [exp] 413 / 4e-143 AT4G32400 424 / 3e-147 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10034806 [exp] 194 / 4e-58 AT3G20240 491 / 5e-175 Mitochondrial substrate carrier family protein (.1) Lus10033351 [exp] 192 / 1e-57 AT3G20240 496 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10016736 [exp] 174 / 1e-49 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 172 / 1e-49 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10043022 [exp] 173 / 4e-49 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10022431 [exp] 168 / 2e-47 AT5G51050 737 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032364 [exp] 160 / 2e-45 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G252100 [exp] 546 / 0 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.018G029200 [exp] 535 / 0 AT4G32400 483 / 2e-171 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.008G004100 [exp] 204 / 3e-62 AT3G20240 494 / 1e-176 Mitochondrial substrate carrier family protein (.1) Potri.015G108900 [exp] 172 / 9e-49 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.001G094100 [exp] 164 / 3e-47 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 164 / 4e-47 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.012G110700 [exp] 167 / 6e-47 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.003G137500 [exp] 161 / 7e-46 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 160 / 2e-45 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.007G093300 [exp] 160 / 5e-45 AT5G64970 516 / 0.0 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10002902 pacid=23148603 polypeptide=Lus10002902 locus=Lus10002902.g ID=Lus10002902.BGIv1.0 annot-version=v1.0 ATGGGCGGCAGGGGAAGAGGGATTCAGTTGTTCGACAATAAAGGCGACGGATTTCTATCAATCTCCGGATTGGGTTCTCAAAACGACGTCCTTCAGTCTT TCCCTGGCGCCGGCGGCCTTTTCGCCAGCGTCAATCAGAATGAGAACGGAGGTGTGAAGATGAAAGCTTTCTACAGTGATTTGTACGACAAGTATCTTTC ATCCTTTGCTGGATTCAAAGAGGATGAAGAAACGGAAACCACCTTAGAGAAGAAGAAGGGGAAGAAGAAAGGATGGCTTAAGGTGAAGATTAAGGTTAGG AATCCTTCATTGAGAAGGTTGCTAAGTGGGGGGATTGCAGGAGCTGTGTCTAGAACCGCCGTTGCGCCATTGGAGACTATAAGGACTCATTTGATGGTGG GGAGCAGTGGCTGCACATCCACTGAGGTGTTTGACAGTATAATGCAGCATGATGGCTGGACTGGTTTATTTAGGGGGAATTTGGTTAATGTCATTCGTGT TGCTCCTAGCAAGGCCATTGAGTTATTTGCATACGATACAGTCAACAAGAAGTTATCTCCTGCACCTGGAGAGCAAGCCAAGCTTCCTATTCCAGCCTCA TTGATTGCTGGTGCATGCGCCGGGGTGACCTCAACTCTGTGCACTTACCCCTTGGAGTTGGTCAAGACTCGCCTAACCATACAAAGAGGTGTCTACAAAG GCATAGTAGATGCATTCATGAAGATCCTCCAACAAGAAGGCCCCGGCGAGCTCTACAGAGGGCTCGCCCCGAGCCTGATCGGAGTCGTTCCATACGCTGC CACAAACTACTTCGCCTACGACACATTACGAAAGGCGTACCGGAAGATACTGAAGCAAGAGAAGATAGGGAACATCGAGACCTTGCTGATCGGTTCAGCA GCGGGCGCTATTTCAAGCAGCGCGACTTTCCCTCTCGAGGTTGCAAGGAAACAGATGCAGGTGGGCGCCTTGAGCGGGAGGCAAGTTTATAAGAACGTGG TTCATGCATTGGCGAGCATACTTGAGAAGGAAGGGATCCAAGGTTTGTACAAAGGTCTTGGACCGAGCTGCATGAAACTGGTTCCTGCTGCTGGGATTTC GTTCATGTGCTATGAAGCTTGCAAGAGGATTCTTGTTGATGATGATCAGGAACAAGAAGAATCATAG
AA sequence Show only first row Show all	>Lus10002902 pacid=23148603 polypeptide=Lus10002902 locus=Lus10002902.g ID=Lus10002902.BGIv1.0 annot-version=v1.0 MGGRGRGIQLFDNKGDGFLSISGLGSQNDVLQSFPGAGGLFASVNQNENGGVKMKAFYSDLYDKYLSSFAGFKEDEETETTLEKKKGKKKGWLKVKIKVR NPSLRRLLSGGIAGAVSRTAVAPLETIRTHLMVGSSGCTSTEVFDSIMQHDGWTGLFRGNLVNVIRVAPSKAIELFAYDTVNKKLSPAPGEQAKLPIPAS LIAGACAGVTSTLCTYPLELVKTRLTIQRGVYKGIVDAFMKILQQEGPGELYRGLAPSLIGVVPYAATNYFAYDTLRKAYRKILKQEKIGNIETLLIGSA AGAISSSATFPLEVARKQMQVGALSGRQVYKNVVHALASILEKEGIQGLYKGLGPSCMKLVPAAGISFMCYEACKRILVDDDQEQEES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10002902 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10038689 [exp]	17.7	0.7108
					Lus10006349 [exp]	20.3	0.7191
AT5G17530			phosphoglucosamine mutase fami...		Lus10040402 [exp]	34.2	0.6176
					Lus10019006 [exp]	44.0	0.5963
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10039775 [exp]	59.0	0.6521
AT4G13710			Pectin lyase-like superfamily ...		Lus10038157 [exp]	68.1	0.6647
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10035981 [exp]	85.7	0.6528
AT5G59350			unknown protein		Lus10005456 [exp]	90.3	0.6373
AT5G02440			unknown protein		Lus10016560 [exp]	114.0	0.5659
AT1G65560			Zinc-binding dehydrogenase fam...		Lus10040589 [exp]	157.6	0.6031

Compare expression of checked genes

Lus10002902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.