Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11170 422 / 9e-145 DEAD/DEAH box RNA helicase family protein (.1.2) AT5G11200 422 / 9e-145 DEAD/DEAH box RNA helicase family protein (.1.2.3) AT4G00660 134 / 6e-34 ATRH8 RNAhelicase-like 8 (.1.2) AT3G61240 132 / 3e-33 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G45810 131 / 8e-33 DEA(D/H)-box RNA helicase family protein (.1) AT3G19760 123 / 1e-30 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT1G72730 117 / 1e-28 DEA(D/H)-box RNA helicase family protein (.1) AT3G13920 117 / 1e-28 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G54270 116 / 4e-28 EIF4A-2 eif4a-2 (.1.2) AT1G51380 114 / 1e-27 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014260 [exp] 455 / 2e-157 AT5G11200 794 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10025960 [exp] 453 / 1e-145 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1) Lus10002021 [exp] 364 / 4e-121 AT5G11200 768 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10017804 [exp] 134 / 6e-34 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10002022 [exp] 130 / 7e-34 AT1G64870 241 / 3e-78 unknown protein Lus10014783 [exp] 133 / 1e-33 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10030377 [exp] 130 / 1e-32 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2) Lus10040975 [exp] 118 / 2e-29 AT3G19760 494 / 1e-176 eukaryotic initiation factor 4A-III (.1) Lus10017407 [exp] 117 / 1e-28 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G253100 [exp] 441 / 5e-152 AT5G11170 808 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.018G028600 [exp] 440 / 9e-152 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.002G157500 [exp] 135 / 2e-34 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.014G081100 [exp] 134 / 7e-34 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.005G093900 [exp] 129 / 1e-32 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.007G070000 [exp] 127 / 3e-32 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.018G061050 [exp] 121 / 7e-30 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G225700 [exp] 121 / 8e-30 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.001G197900 [exp] 120 / 2e-29 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.003G043700 [exp] 117 / 1e-28 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10002905 pacid=23148586 polypeptide=Lus10002905 locus=Lus10002905.g ID=Lus10002905.BGIv1.0 annot-version=v1.0 ATGGGAGAAACTAGAGACAACGATTATGAGGAAGAGCTTCTCGATTACGAGGAAGAGGAGGAGAAAGCCCCAGACTCCGTCACTGCCAAAGTCAACGGCG AAGCTCCCAAGAAGGGATATGTTGGGATACACAGTTCGGGATTCAGAGACTTCCTTTTGAAGCCAGAGCTACTTCGGGCTATTGTAGATTCTGGGTTTGA GCATCCTTCTGAAGCTCCTTATATTGGCTCTTATGAGTTATTCATGTATTTCAAATCTGTGGTGGCCTTGATAAACGTAATAATTCACTATCATAATCTT GGTTTTGGAGCACTATTCTGGTTTGGTTGCCTTTCAATTAGCGGACCTGAAGGTATGTGTACTTATGAGGGGATCCTCGGTCCAATTTTCTTTCGTTCTT CATCAGTGCAACACGAGTGTATTCCCCAAGCCATCTTGGGAATGGATGTTATCTGCCAAGCTAAGTCTGGTATGGGAAAGACTGCTGTCTTTGTTCTGTC TACTCTCCAGCAAATTGAGCCAACTGCAGGGCAGGTTATTGCCCTTGTTCTGTGTCACACAAGAGAACTTGCGTACCAGATCTGTCACGAGTTTGAGAGG TTCAGTACCTACTTGCCGGATACCAAAGTTGCTCCGATGGAAATCTATGTTGACGATGAGGCCAAGTTGACACTTCATGGACTTGTACAGCACTACATCA AATTGACCGAGCTGGAGAAAAACCGGAAGCTGAATGACCTTCTTGATGCCCTGGACTTCAATCAAGTTGTTATCTTCGTCAAAAGTGTGAGCCGGGCTGC TGAGCTGAACAAGTTGCTGATCGAGTGTAATTTCCCTTCAATATGCATCCACTCGGGAATGTCCCAGGAGGAAAGGTTGACACGCTACAAGGGTTTTAAA GAGGGCCATAAAAGGATTCTTGTGGCCACCGATCTGGTTGGAAGAGGAATTGACATAGAGCGTGTCAACATTGTTATCAACTACGACATGCCTGATTCTG CGGACACATATCTTCACAGGGTTGGTCGTGCTGGTAGGTTTGGAACAAAGGGTCTCGCAATTACGTTTGTTTCATCAGCTTCAGACTCAGATGTTCTCAA TCAGGTTCAGGAGAGGTTCGAGGTGGACATTAAAGAACTTCCGGAGCAAATTGACACTTCAACATACACGGATAGCTTTCTTGGTTTCGGAGGTGTAAGG TTGTTTGTTAGCAGGGAAAGGGTAGAGATGCAGGACGGTGGGCGCTCTGTGAGGGCCGCCACTCCTAGCGAGTCTTCTTCGAGACCTCGACAAGTGTTCG GCCATCTTCTATGGCTAGTTATGATGCAAGAGAACATGGTCGCCTGTGGATACCAACAGCCGCTGTGTGCAAGGATGATGATGAGTTCGGTCACCGTGGT GGATCGGGTGCTTGGTGGGGGTAGGATTGCCAAGTTCCAGATCAACGGGAAACACATCTGGGCCCGGAAGTATGAGAGGAGGGAACAACTCTCGATGTCA ACGAAGATTCCACCTCCGCCGGTGTAA
AA sequence Show only first row Show all	>Lus10002905 pacid=23148586 polypeptide=Lus10002905 locus=Lus10002905.g ID=Lus10002905.BGIv1.0 annot-version=v1.0 MGETRDNDYEEELLDYEEEEEKAPDSVTAKVNGEAPKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEAPYIGSYELFMYFKSVVALINVIIHYHNL GFGALFWFGCLSISGPEGMCTYEGILGPIFFRSSSVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTAGQVIALVLCHTRELAYQICHEFER FSTYLPDTKVAPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLIECNFPSICIHSGMSQEERLTRYKGFK EGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYTDSFLGFGGVR LFVSRERVEMQDGGRSVRAATPSESSSRPRQVFGHLLWLVMMQENMVACGYQQPLCARMMMSSVTVVDRVLGGGRIAKFQINGKHIWARKYERREQLSMS TKIPPPPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002905 [exp]	0	1
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10037326 [exp]	1.4	0.8919
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10035745 [exp]	2.0	0.8850
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Lus10002699 [exp]	3.5	0.8449
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10036022 [exp]	5.2	0.8709
AT2G40430			unknown protein		Lus10037530 [exp]	6.7	0.8613
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10021315 [exp]	8.5	0.8637
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10029959 [exp]	9.5	0.8154
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10031573 [exp]	9.7	0.7955
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10028430 [exp]	9.9	0.8416
AT1G09010			glycoside hydrolase family 2 p...		Lus10000159 [exp]	13.0	0.8357

Compare expression of checked genes

Lus10002905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.