Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47650 110 / 9e-32 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002020 [exp] 124 / 5e-38 AT3G47650 90 / 7e-25 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10019417 [exp] 117 / 3e-34 AT3G47650 128 / 2e-38 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10005719 [exp] 115 / 5e-34 AT3G47650 130 / 4e-40 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10030091 [exp] 114 / 1e-33 AT3G47650 129 / 3e-39 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10043274 [exp] 92 / 1e-24 AT3G47650 107 / 1e-30 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10026899 [exp] 45 / 2e-06 AT2G24860 154 / 6e-49 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10001328 [exp] 43 / 1e-05 AT5G17840 143 / 3e-44 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10024330 [exp] 38 / 0.0006 AT1G75690 164 / 1e-52 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G028500 [exp] 129 / 1e-39 AT3G47650 120 / 4e-36 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G068300 [exp] 118 / 3e-35 AT3G47650 140 / 9e-44 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G016400 [exp] 47 / 3e-07 AT2G24860 165 / 5e-53 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.006G266800 [exp] 44 / 4e-06 AT2G24860 167 / 3e-54 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.013G066000 [exp] 41 / 5e-05 AT5G17840 145 / 4e-45 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.019G040400 [exp] 40 / 7e-05 AT5G17840 145 / 4e-45 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002906 pacid=23148589 polypeptide=Lus10002906 locus=Lus10002906.g ID=Lus10002906.BGIv1.0 annot-version=v1.0 ATGGCTGCAGTGGCGAGCTCTAATATGGCGCTCTCCGTTCCATATCCAGTGACATATACAGTACAGCTGAGTTCATCGCTGGGAAGTAAGCAGGAAAGCC ATGGCGGCCTGCAGAAAGCTTCAATTACCAGTAGAAGAAGAAGGTTTATCCGTTTGAAAGCCCAGGCTGCAGAAGAAAATCAAGTCCCGAAACGGAAGAG TGTGATATGCTCTGACTGTGATGGAAATGGTGCTGTTCAGTGCTCACAGTGCAAAGGCAATGGTGTAAACCCAGTTGATTTCTTCAATGGGCAGTTCAAA GCTGGCGATTCGTGTTGGCTTTGCGGGGGGAAGAAAGATATGTTATGTGGGAACTGCAATGGAGCTGGATTCCTTGGTGGCTTTATCAGCACTGGTGATC AGTGA
AA sequence Show only first row Show all	>Lus10002906 pacid=23148589 polypeptide=Lus10002906 locus=Lus10002906.g ID=Lus10002906.BGIv1.0 annot-version=v1.0 MAAVASSNMALSVPYPVTYTVQLSSSLGSKQESHGGLQKASITSRRRRFIRLKAQAAEENQVPKRKSVICSDCDGNGAVQCSQCKGNGVNPVDFFNGQFK AGDSCWLCGGKKDMLCGNCNGAGFLGGFISTGDQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002906 [exp]	0	1
AT1G12250			Pentapeptide repeat-containing...		Lus10024602 [exp]	1.0	0.9607
AT2G03420			unknown protein		Lus10036810 [exp]	1.4	0.9592
AT3G29185			Domain of unknown function (DU...		Lus10032999 [exp]	2.6	0.9398
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Lus10027129 [exp]	2.8	0.9483
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10000828 [exp]	4.2	0.9516
AT5G38510			Rhomboid-related intramembrane...		Lus10000628 [exp]	6.8	0.9242
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10042461 [exp]	8.7	0.9451
AT1G07700			Thioredoxin superfamily protei...		Lus10032343 [exp]	10.1	0.9400
AT1G51110			Plastid-lipid associated prote...		Lus10012100 [exp]	12.4	0.9299
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10025809 [exp]	13.4	0.9372

Compare expression of checked genes

Lus10002906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.