Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16080 190 / 5e-58 ATCXE17 carboxyesterase 17 (.1) AT2G03550 172 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 172 / 3e-51 alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 167 / 3e-49 alpha/beta-Hydrolases superfamily protein (.1) AT1G68620 162 / 2e-47 alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 155 / 5e-45 ATCXE13 carboxyesterase 13 (.1) AT3G48690 147 / 1e-41 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 141 / 1e-39 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G63010 136 / 4e-37 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 135 / 5e-37 ATCXE5 carboxyesterase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002019 [exp] 605 / 0 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1) Lus10017587 [exp] 186 / 2e-56 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10033548 [exp] 181 / 3e-54 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1) Lus10036168 [exp] 174 / 6e-52 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042662 [exp] 172 / 2e-51 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10021745 [exp] 170 / 2e-50 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10012073 [exp] 157 / 2e-45 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10009308 [exp] 155 / 9e-45 AT2G45600 340 / 7e-117 alpha/beta-Hydrolases superfamily protein (.1) Lus10027909 [exp] 155 / 1e-44 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G028300 [exp] 447 / 3e-159 AT1G68620 199 / 1e-61 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G253300 [exp] 378 / 2e-132 AT5G16080 173 / 9e-52 carboxyesterase 17 (.1) Potri.004G101400 [exp] 206 / 3e-64 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.017G113700 [exp] 206 / 3e-64 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.010G127600 [exp] 192 / 9e-59 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.008G118400 [exp] 176 / 1e-52 AT1G68620 345 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G155800 [exp] 167 / 3e-49 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G028400 [exp] 162 / 4e-49 AT1G68620 100 / 3e-25 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G103800 [exp] 165 / 1e-48 AT1G49660 233 / 2e-75 carboxyesterase 5 (.1) Potri.009G104300 [exp] 163 / 5e-48 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10002907 pacid=23148611 polypeptide=Lus10002907 locus=Lus10002907.g ID=Lus10002907.BGIv1.0 annot-version=v1.0 ATGTCATCATCAATTGTTGCGGAAGCACCGAGCTACCTACAAGTCTTCTCCGACGGTTCAGTCAAACGCTTGATTCCAGAGTCAGTCCCTCCCTCTAAGG ACTCGTACGCTGATGGATTCAAGTTCAAGGACGTCACTGTCGATCCATCCAAGCCAGTAACGGCCAGGATGTTCATCCCTGATGATGATCACGATCACCT CCTCCCCGTTCTGGTCTACTTCCACGGTGGTGGATTTTGCATTGGCTCAACCACATGGCTCGGTTACCATCACTTTCTTGGTGACTTGTGTGCCAAGTCT CACTGCATTATCCTATCTGTTGATTACCGTCTGGCCCCAGAGAACCGCCTCCCAATAGCGTACGAGGATTGTTACGCATCGCTAGAATGGCTGAGTCGAC AAGTGATCAATATGTGTCCCGAAGAACCTTGGCTTCGATCAGCTGACCTGTCTCGAGTCTTCCTGTCGGGAGACAGTGCTGGAGCCAACATCTCGCACCA CGTTGCCATCAAAGCATCATCAAGGAACAACCCGGTACAAAATGTTAGCATCAAAGGACTTCTGATGATACATCCTTATTTCGGAAGCGAATCGAGAACC ACAAAAGAGGCAATGGACGATGGCTCAACAGATGATGTGAAGATGAATGACTTGTTCTGGAAGCTAAGCATACCCGAGGGATCAAACCGCGATTACTATG GCTGTAACATCGAGAAACAAGATGTTTCAAATGCCGAATGGAGCGAATTCCCAGCTGTAACCGTATATGTTGCCGGCCTGGATTTCTTGAAGGAGAGGGG AGTCATGTATGCAGAGTTCTTGGCTAGGAAAGGAGTTAAGGAAGTTACGGTAATCGAAACCGAAAACCAGCCACACATCTTCCATGTGTTCTATCCGAAA TCAGATGAAACTCGATTGCTCCAGAGTCAGATGAGCAAGTTCATGGAGATTCATTAG
AA sequence Show only first row Show all	>Lus10002907 pacid=23148611 polypeptide=Lus10002907 locus=Lus10002907.g ID=Lus10002907.BGIv1.0 annot-version=v1.0 MSSSIVAEAPSYLQVFSDGSVKRLIPESVPPSKDSYADGFKFKDVTVDPSKPVTARMFIPDDDHDHLLPVLVYFHGGGFCIGSTTWLGYHHFLGDLCAKS HCIILSVDYRLAPENRLPIAYEDCYASLEWLSRQVINMCPEEPWLRSADLSRVFLSGDSAGANISHHVAIKASSRNNPVQNVSIKGLLMIHPYFGSESRT TKEAMDDGSTDDVKMNDLFWKLSIPEGSNRDYYGCNIEKQDVSNAEWSEFPAVTVYVAGLDFLKERGVMYAEFLARKGVKEVTVIETENQPHIFHVFYPK SDETRLLQSQMSKFMEIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002907 [exp]	0	1
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027772 [exp]	4.7	0.9449
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10035782 [exp]	5.3	0.9447
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10006337 [exp]	5.3	0.8972
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035700 [exp]	6.7	0.9165
AT3G56570			SET domain-containing protein ...		Lus10029539 [exp]	6.9	0.9434
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	8.5	0.9057
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036819 [exp]	9.2	0.9412
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10011998 [exp]	10.7	0.9357
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10014177 [exp]	11.0	0.8952
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10015734 [exp]	11.5	0.9356

Compare expression of checked genes

Lus10002907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.