Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26660 303 / 3e-103 ATSPX2 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) AT5G20150 298 / 1e-101 ATSPX1 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) AT5G15330 192 / 1e-59 ATSPX4 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) AT2G45130 154 / 1e-45 ATSPX3 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) AT4G22990 45 / 4e-05 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT1G63010 45 / 5e-05 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein AT4G11810 44 / 0.0001 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002018 [exp] 535 / 0 AT2G26660 308 / 2e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10030095 [exp] 313 / 3e-107 AT5G20150 356 / 8e-125 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10043272 [exp] 299 / 9e-102 AT5G20150 343 / 8e-120 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10019415 [exp] 291 / 2e-96 AT5G20150 326 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10009314 [exp] 56 / 2e-08 AT4G22990 941 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10015852 [exp] 49 / 3e-06 AT4G22990 926 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10006340 [exp] 48 / 7e-06 AT4G22990 1128 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10021164 [exp] 43 / 0.0003 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10011799 [exp] 42 / 0.0004 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G253400 [exp] 400 / 1e-141 AT5G20150 308 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.018G028200 [exp] 391 / 4e-138 AT2G26660 321 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Potri.018G131500 [exp] 310 / 6e-106 AT5G20150 356 / 1e-124 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.006G069500 [exp] 306 / 2e-104 AT5G20150 359 / 8e-126 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.002G143900 [exp] 187 / 2e-58 AT2G45130 276 / 1e-93 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.014G061400 [exp] 187 / 3e-58 AT2G45130 269 / 4e-91 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.001G193200 [exp] 162 / 3e-49 AT5G20150 158 / 2e-48 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.017G086600 [exp] 160 / 4e-47 AT5G15330 335 / 4e-115 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) Potri.001G135950 [exp] 88 / 3e-21 AT2G45130 121 / 7e-35 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.003G120600 [exp] 49 / 2e-06 AT4G22990 1112 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Lus10002908 pacid=23148582 polypeptide=Lus10002908 locus=Lus10002908.g ID=Lus10002908.BGIv1.0 annot-version=v1.0 ATGAAGTTCTGGAAGAGTCTCAGCATATTGATCGAGGATACTCTGCCTGAATGGAGGGACAAATTCTTGTCTTACAAGGACTTGAAGAAGCAGCTGAAGC TGATTTACCCCAAGGACGGAGATAAGCCTCCGAGCAAGCGGTTGAAATCGGACGATCAGGCGGCGGATTGTAACGGGCGGGACAGTGGCGCCGTGACGAA GGAAGTGATCGATTTCGTCAGGCTCTTGGAGGATGAGATGGAGAAGCTGAATTCGTTTATCGTTGAGAAGGAAGAAGACTCCGTCATCAAGTGGAAGGAG TTGCAAGATGGGGTTGCAGAGGCCAAGGACTCGAAAGAAGAGCTGATGAGAATAGGCAGAGAGATCGTTGATCTACATGGAGAGATGATTTTGCTGGAGA ATTACAGTGCCCTTAACTATACAGGATTGGTGAAGATTCTGAAGAAGTACGACAAGAGAAGCGGCGCCCTACTCCGCGTCCCATTCATCCGAAAAGTCAC CCAACAACCCTTCTTCACCACTCACGTCCTCAACAAGCTCGTAAAAGAATGCGAGGCAACTCTCCACAACATGTTCACACGTAACGAACCAACAGTAACT TCGTCCGAAGCATCAGCCGACGAGAGCCAAGAAGCTCAGAACTCCTCCCACGAAACAGAGGAGAGGCCGTTCCGTACGGTGCCGAACGAGCTGAACGAGA TCGAGAACATGGAGAGCATGTACGTGAAACAGACGCTGTCGGCGCTGCGGGTGTTGAAGGAGATCCGGAGCGGGAGCTCGACGGTGAACATGTTCTCGTT GCCGCCGCTGCAGAGCCAGTCTCTGGAGGAAGACTGGAAGAAGCTCTCGGTGTTGGAACAAGCGGCCAAGTAG
AA sequence Show only first row Show all	>Lus10002908 pacid=23148582 polypeptide=Lus10002908 locus=Lus10002908.g ID=Lus10002908.BGIv1.0 annot-version=v1.0 MKFWKSLSILIEDTLPEWRDKFLSYKDLKKQLKLIYPKDGDKPPSKRLKSDDQAADCNGRDSGAVTKEVIDFVRLLEDEMEKLNSFIVEKEEDSVIKWKE LQDGVAEAKDSKEELMRIGREIVDLHGEMILLENYSALNYTGLVKILKKYDKRSGALLRVPFIRKVTQQPFFTTHVLNKLVKECEATLHNMFTRNEPTVT SSEASADESQEAQNSSHETEERPFRTVPNELNEIENMESMYVKQTLSALRVLKEIRSGSSTVNMFSLPPLQSQSLEEDWKKLSVLEQAAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002908 [exp]	0	1
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10012556 [exp]	1.7	0.9055
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10019415 [exp]	2.6	0.9248
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10043272 [exp]	4.0	0.9150
AT3G06240			F-box family protein (.1)		Lus10013873 [exp]	4.4	0.8316
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027211 [exp]	4.5	0.8998
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10030095 [exp]	4.9	0.9047
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027210 [exp]	6.3	0.8682
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10006432 [exp]	7.1	0.8623
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10038923 [exp]	7.3	0.8825
AT1G25550	GARP		myb-like transcription factor ...		Lus10021699 [exp]	7.9	0.8769

Compare expression of checked genes

Lus10002908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.