Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49500 322 / 4e-102 SDE1, SGS2, RDR6 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) AT2G05370 130 / 1e-37 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002017 [exp] 554 / 0 AT3G49500 1605 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G253500 [exp] 369 / 2e-119 AT3G49500 1739 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.018G028100 [exp] 368 / 4e-119 AT3G49500 1753 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002909 pacid=23148602 polypeptide=Lus10002909 locus=Lus10002909.g ID=Lus10002909.BGIv1.0 annot-version=v1.0 ATGGATTCGGAAAGGAATGCTGCAGAGACGGTGGTAACTCAGGTTAGCATCGGAGGATTCGACCGTCATTGCAAAGCAGAAGATCTTAGGAAGTACCTGG AAGACAAGATTGGACAGGTTTGGCGTTGCAGACTGAAGACCTCATGGACCCCTCCGGAGTCCCATCCTAAATTCGACATCATCGAAGCAAACAGCATACA GATAACAGACACATACCTCCGAGTGGTGCCCCATGCATTCGTGCATTTCGCATTGCCCGATTCAGCTAGATCCGCCAAGGATGCTGCAATGAACGGTCAG CTATCGTTTCGCAGCGATGGACCTTTGCAGGTCAGTTTGGGTCCGGAAAACCCGTTTCGGCTCAACCAGAGAAGGCGAACTTCAACTCCTTTCAAGATCC CTAATGTGAAACTCGAAATTGGAAGCCTTGTTAGTCAGGAGCAGTTCTTTGTCAGTTGGAAAGGACCCGATTCAGGACTTGATTACTTGGTTGATCCTTT CGACGGGACGTGCAAGTTCTGCTTCACGAGGCAGACGTTCTTCTCGTTCAAAAACTCTCCCGACCATGTACTGCTCAATTGTGATTACAAGATGGAGTTC TTGGTTAGAGACATCCTGGAGATCAAACAGTACCAGGAGATGACTTGCTGGGTTATTCTTTTGCAGCTAGCTGCAGCCCCTCAGGTATGGTACAGAACTG CTGATGACGATATCGAAGCTATGGTACCGTGGGATTTATTAGACGACGATGACCCTTGGATCAGAACTACAGACTTCACAACTAGCGGCGCTATTGGCCG GTGCCACTTCTACCGAGTTTATGGTCCGCCACGCCATCGCCAATAG
AA sequence Show only first row Show all	>Lus10002909 pacid=23148602 polypeptide=Lus10002909 locus=Lus10002909.g ID=Lus10002909.BGIv1.0 annot-version=v1.0 MDSERNAAETVVTQVSIGGFDRHCKAEDLRKYLEDKIGQVWRCRLKTSWTPPESHPKFDIIEANSIQITDTYLRVVPHAFVHFALPDSARSAKDAAMNGQ LSFRSDGPLQVSLGPENPFRLNQRRRTSTPFKIPNVKLEIGSLVSQEQFFVSWKGPDSGLDYLVDPFDGTCKFCFTRQTFFSFKNSPDHVLLNCDYKMEF LVRDILEIKQYQEMTCWVILLQLAAAPQVWYRTADDDIEAMVPWDLLDDDDPWIRTTDFTTSGAIGRCHFYRVYGPPRHRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002909 [exp]	0	1
AT2G32730			26S proteasome regulatory comp...		Lus10007140 [exp]	3.3	0.9336
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10000183 [exp]	3.5	0.9256
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Lus10006586 [exp]	3.7	0.9316
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031185 [exp]	5.5	0.9141
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10022666 [exp]	9.2	0.9176
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10042856 [exp]	10.2	0.9094
AT3G61690			nucleotidyltransferases (.1)		Lus10004019 [exp]	13.6	0.9115
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007932 [exp]	14.5	0.8935
AT2G25320			TRAF-like family protein (.1)		Lus10002926 [exp]	14.7	0.8893
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10034777 [exp]	14.7	0.8880

Compare expression of checked genes

Lus10002909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.