Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49500 1196 / 0 SDE1, SGS2, RDR6 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) AT1G14790 558 / 0 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 (.1) AT4G11130 511 / 1e-165 SMD1, RDR2 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) AT2G19930 103 / 2e-22 RNA-dependent RNA polymerase family protein (.1) AT2G19910 95 / 1e-19 RNA-dependent RNA polymerase family protein (.1) AT2G19920 92 / 7e-19 RNA-dependent RNA polymerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002017 [exp] 1666 / 0 AT3G49500 1605 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10019164 [exp] 546 / 3e-179 AT1G14790 1447 / 0.0 RNA-dependent RNA polymerase 1 (.1) Lus10042134 [exp] 494 / 3e-159 AT4G11130 1368 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10002361 [exp] 323 / 2e-100 AT4G11130 659 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10034262 [exp] 188 / 1e-52 AT1G14790 381 / 2e-123 RNA-dependent RNA polymerase 1 (.1) Lus10012965 [exp] 102 / 9e-22 AT2G19930 645 / 0.0 RNA-dependent RNA polymerase family protein (.1) Lus10034390 [exp] 77 / 1e-16 AT1G14790 147 / 2e-42 RNA-dependent RNA polymerase 1 (.1) Lus10034391 [exp] 44 / 3e-05 AT1G14790 87 / 3e-21 RNA-dependent RNA polymerase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G253500 [exp] 1310 / 0 AT3G49500 1739 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.018G028100 [exp] 1293 / 0 AT3G49500 1753 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.010G105200 [exp] 581 / 0 AT1G14790 1298 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G104900 [exp] 573 / 0 AT1G14790 1276 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.008G136100 [exp] 572 / 0 AT1G14790 1448 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.008G135800 [exp] 572 / 0 AT1G14790 1205 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.015G073700 [exp] 538 / 2e-176 AT4G11130 1422 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Potri.007G081300 [exp] 115 / 6e-26 AT2G19930 868 / 0.0 RNA-dependent RNA polymerase family protein (.1) Potri.006G164400 [exp] 110 / 1e-24 AT2G19930 861 / 0.0 RNA-dependent RNA polymerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05183 [flax] [poplar] RdRP RNA dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Lus10002910 pacid=23148583 polypeptide=Lus10002910 locus=Lus10002910.g ID=Lus10002910.BGIv1.0 annot-version=v1.0 ATGTTGAGAAAGCAACCTGCGGAGATCAACGTTGCTGCTCTGAAGCAGATATGCTCGTACAAGCGGCCTGTCTTCGAAGCGTCTCAGGAGCTGGAAGCTG CCCGAAGGAGGATTTCACAGAGCAATAATGCAATCAGGGTCAATACACGGTTGGAAGACCTTGCTGAGATCAGAAGGTTGGTGATTACTCCAACTAGAGC TTACTGTCTCCCTCCGGAGGTTGAGCTCTCCAATAGAGTGTTGCGGAAATACAAAGATGTGGGCAATCGGTTTCTGCGAGTAACTTTTATGGACGAGGGG TTCCAAACAATCAATTCGAGTGCGTTTTCGTATTATGTGGCTCCTATCGTGAGAGATATCACCTCTAACTCATTTCCTCAGAGGACCATCATTTTCAAAA GGGTTCGAAGCGTCCTCACTGATGGATTTTACTTATGTGGCCGAAGATACACTTTCTTGGCTTTCTCGTCGAATCAGTTGAGAGATCGCTCTGCTTGGTT CTTCGCTGAGGATGGGAAGATAAACACGTTTGGTATAAGAGCTTGGATGGGTAAATTCAGAGACCGGAATATCGCCAAATGTGCTGCTCGGATGGGTCAG TGCTTTTCCTCTACATATGCCAGTGTTGATGTTCCGTCATCCGAGGTCAATGAAGAACTCCCCGACATCAAGAGGAACGGTTACAACTTCTCAGACGGGA TTGGCATGATTACACCTGATCTCGCCCAGGAAGTTGCTATCAAGTTGAAGTTAGATGCTGATCCACCATGTGCATACCAGATCAGATATGCTGGTTGCAA AGGTGTTGTGGCTTGCTGGCCGGCACAGACAAATGGGGCGGCTCGTTTGTCTTTAAGGGAAAGCATGAACAAGTTTAGGTCAACTCATACTACTTTGGAG ATATGCTCGTGGACTAGATTTCAGGCAGGTTTCTTGAACAGGCAGATAATTACGTTGCTCTCAACTCTGGATGTTCCCGATACGGTCTTTTGGGAGATGC AACAGCGGCAGCTGTCTAAACTGAACCGAATGCTCCTGGACACCGACGTAGCATTTGATGTTCTCACTGCATCATGTGCCGAGCAAGGAACTGTTGCTGC GCTTATGCTGAGTGCAGGTTTCGATCCTCAGTCCGAACCTCATCTAAGAGGTATGCTGACTTCCATAAGAGCTTCACAGCTCTGGGGACTGAGGGAGAAG TCCAGAATCTTTGTCCAAAGCGGGAGATGGTTAATGGGCTGCCTCGACGAACTAGCGGTGCTTGAGCAAGGACAGTGCTTCATTCAAGTCTCTAAACCGT CTCTCCAGAACTGTTTCTTGAAGCACGGTTCGAAGTTTCAAGACACGAAGAAGGACCTTCATGTGGTCACGGGGACCGTGGTGATCGCGAAGAATCCTTG TCTGCATCCGGGAGATGTCAGGGTGCTGGAAGCAGTTGATAACCCTGGTCTGCATCATCTGTATGATTGTCTCGTTTTCCCCCAGAATGGCGAAAGACCC CATTCGAATGAGGCTTCTGGAAGTGATCTTGATGGTGACTTGTATTTCGTCACATGGGATGAACATCTTATTCCTCCTAGCAAAAGGAGTTGGCCGCCCA TGCAGTACGATGCCGCAGAGGCGAAAAAACTAAATCGCGAGGTGAACACTCAGGACATTATAGAGTTCTTTGTAAAGAACATGGTGAACGAGCACTTGGG CGCAATCTGCAACGCTCACGTGGTTCACGCAGATCTTAGTGAGTACGGAGCTCTAGACGAAAAATGCATCACATTAGCAGAGCTGGCTGCAACAGCTGTC GACTTCCCGAAAACTGGGAAGCTCGTTGCAATGCCAGGGCATCTCAAACCGAAGCTCTATCCAGACTTCATGGGGAAGGAGGATAACCAGTCGTACGAGT CGAGGAAAATCCTGGGCAGACTCTATCACCAGGTCAAAGATGCAGTTGACAATGAAGAATCTGCTGCTGAATCGTCTGAGCTCAACGGTAAGATACTTTA CGATGGCGATCTGAGTGTTCTGGGAACGGCCGATTTCATCATGGAAGCGTGGGATCTGAAATGCTCGTACGACAAACAGTTGAGAGGTCTGCTTCAGCAG TATAAAGTGCAGAGGGAAGAAGAGATTGTGACGGGACACGTTTGGTCGATGCCCAAGTCGAGCAGCAAGAAGCAGGGCGAACTCAAGGAACGGCTGAAGC ACTCATATAATTCGCTGAGGAAAGAGTTCCGGCAGATTTTCGAGAATATGGGCGACGATGTGGCGCTCACGGAGGAAGAGAGGAATTCTGTGCTTGAGCG GAAAGCTGCGGCTTGGTATCAAGTTACTTATAATCCGAGATGGGTGAACCGGTCTCTGGAACTGGCGGTTGGTAGTTCTTCAAATGGAGTCATGCTTAGC TTCCCGTGGATTGCGGCCGATTACCTTGCTCGAATAAAGGTCAGGAGTAGGGGACCGGGAACTGATGATCCGGGTAAACCGATTAACGTTATTCGGAGGT ACCTTGCTGAGAGGATGTGA
AA sequence Show only first row Show all	>Lus10002910 pacid=23148583 polypeptide=Lus10002910 locus=Lus10002910.g ID=Lus10002910.BGIv1.0 annot-version=v1.0 MLRKQPAEINVAALKQICSYKRPVFEASQELEAARRRISQSNNAIRVNTRLEDLAEIRRLVITPTRAYCLPPEVELSNRVLRKYKDVGNRFLRVTFMDEG FQTINSSAFSYYVAPIVRDITSNSFPQRTIIFKRVRSVLTDGFYLCGRRYTFLAFSSNQLRDRSAWFFAEDGKINTFGIRAWMGKFRDRNIAKCAARMGQ CFSSTYASVDVPSSEVNEELPDIKRNGYNFSDGIGMITPDLAQEVAIKLKLDADPPCAYQIRYAGCKGVVACWPAQTNGAARLSLRESMNKFRSTHTTLE ICSWTRFQAGFLNRQIITLLSTLDVPDTVFWEMQQRQLSKLNRMLLDTDVAFDVLTASCAEQGTVAALMLSAGFDPQSEPHLRGMLTSIRASQLWGLREK SRIFVQSGRWLMGCLDELAVLEQGQCFIQVSKPSLQNCFLKHGSKFQDTKKDLHVVTGTVVIAKNPCLHPGDVRVLEAVDNPGLHHLYDCLVFPQNGERP HSNEASGSDLDGDLYFVTWDEHLIPPSKRSWPPMQYDAAEAKKLNREVNTQDIIEFFVKNMVNEHLGAICNAHVVHADLSEYGALDEKCITLAELAATAV DFPKTGKLVAMPGHLKPKLYPDFMGKEDNQSYESRKILGRLYHQVKDAVDNEESAAESSELNGKILYDGDLSVLGTADFIMEAWDLKCSYDKQLRGLLQQ YKVQREEEIVTGHVWSMPKSSSKKQGELKERLKHSYNSLRKEFRQIFENMGDDVALTEEERNSVLERKAAAWYQVTYNPRWVNRSLELAVGSSSNGVMLS FPWIAADYLARIKVRSRGPGTDDPGKPINVIRRYLAERM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002910 [exp]	0	1
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10009539 [exp]	6.5	0.8120
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10038816 [exp]	9.9	0.8081
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10031498 [exp]	11.7	0.7790
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10025650 [exp]	13.0	0.8005
AT2G33730			P-loop containing nucleoside t...		Lus10031509 [exp]	13.9	0.8047
AT5G66820			unknown protein		Lus10002968 [exp]	17.7	0.7735
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	19.1	0.7806
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10025071 [exp]	21.0	0.7313
AT5G19130			GPI transamidase component fam...		Lus10032125 [exp]	21.4	0.8014
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022445 [exp]	23.9	0.7766

Compare expression of checked genes

Lus10002910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.