Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15370 253 / 5e-88 SNARE-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002016 [exp] 298 / 7e-106 AT1G15370 253 / 7e-88 SNARE-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G193100 [exp] 246 / 2e-85 AT1G15370 263 / 7e-92 SNARE-like superfamily protein (.1) Potri.006G253700 [exp] 213 / 3e-72 AT1G15370 197 / 4e-66 SNARE-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF01217 [flax] [poplar] Clat_adaptor_s Clathrin adaptor complex small chain
Representative CDS sequence Show only first row Show all	>Lus10002911 pacid=23148613 polypeptide=Lus10002911 locus=Lus10002911.g ID=Lus10002911.BGIv1.0 annot-version=v1.0 ATGTTGCTCGCAGTTCTCATCTCGAATTCGGTGGGCAATATTCTCGTGGAAAGATTCAATGGAGTTCCAGCTGAGGAGCGATTGCACTGGCGATCTTTCC TGGTGAAACTGGGAGCTGACAATCTCAAGCACGCCAAGAACGAAGAACTCTTCGTTGCTTCCCACAAGTCAGTTTATATCGTGTATACGGTGCTGGGAGA TATCTGCCTTTACGTTGTTGGCAAGGATGAATATGATGAACTAGCTTTGTCTGAAGCCATCTTTGTGATAACGGGATCGATCAAGGATATCTGCAAGAAG CCTCCGACGGAGCGGACTTTCCTCGATAAGTATGGGAAGATATGTCTGTCCCTCGATGAAATCGTCTGGAAGGGGATCCTGGAGAACACAGACAAAGACA GGATCAAAAGGCTGATTAGATTGAAGCCTCCAACAGATGTTTGA
AA sequence Show only first row Show all	>Lus10002911 pacid=23148613 polypeptide=Lus10002911 locus=Lus10002911.g ID=Lus10002911.BGIv1.0 annot-version=v1.0 MLLAVLISNSVGNILVERFNGVPAEERLHWRSFLVKLGADNLKHAKNEELFVASHKSVYIVYTVLGDICLYVVGKDEYDELALSEAIFVITGSIKDICKK PPTERTFLDKYGKICLSLDEIVWKGILENTDKDRIKRLIRLKPPTDV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15370			SNARE-like superfamily protein...		Lus10002911 [exp]	0	1
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10024417 [exp]	3.0	0.8433
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10030294 [exp]	3.5	0.8375
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10028200 [exp]	3.6	0.7880
AT3G24160		PMP	putative type 1 membrane prote...		Lus10000760 [exp]	4.0	0.8361
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10000062 [exp]	5.4	0.7627
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	6.5	0.8406
AT2G46000			unknown protein		Lus10017790 [exp]	7.1	0.7818
AT5G54750			Transport protein particle (TR...		Lus10028720 [exp]	7.3	0.8140
AT5G59613			unknown protein		Lus10040848 [exp]	7.9	0.7374
AT5G35080			unknown protein		Lus10008819 [exp]	8.1	0.8259

Compare expression of checked genes

Lus10002911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.