Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25490 711 / 0 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 617 / 0 EBF2 EIN3-binding F box protein 2 (.1) AT4G15475 155 / 4e-40 F-box/RNI-like superfamily protein (.1) AT5G23340 114 / 4e-27 RNI-like superfamily protein (.1) AT5G01720 102 / 2e-22 RNI-like superfamily protein (.1) AT5G27920 94 / 1e-19 F-box family protein (.1) AT3G58530 82 / 1e-16 RNI-like superfamily protein (.1) AT5G67250 78 / 8e-15 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT1G21410 76 / 1e-14 SKP2A F-box/RNI-like superfamily protein (.1) AT4G33210 74 / 1e-13 SLOMO SLOW MOTION, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002014 [exp] 1106 / 0 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002165 [exp] 641 / 0 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10030102 [exp] 634 / 0 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10012764 [exp] 158 / 3e-40 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10001264 [exp] 136 / 1e-33 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10034013 [exp] 128 / 1e-30 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10012214 [exp] 124 / 3e-29 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 117 / 4e-28 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 113 / 1e-26 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G254100 [exp] 823 / 0 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 819 / 0 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 685 / 0 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G068500 [exp] 678 / 0 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G105400 [exp] 128 / 6e-31 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 125 / 4e-30 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 119 / 6e-28 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.019G123400 [exp] 115 / 1e-26 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.005G022600 [exp] 107 / 3e-24 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.005G088800 [exp] 97 / 2e-21 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10002913 pacid=23148594 polypeptide=Lus10002913 locus=Lus10002913.g ID=Lus10002913.BGIv1.0 annot-version=v1.0 ATGTCTCAGCTATTCGGATTTGCTGGAAGTGACGATTTTTACAGCTCAAACCCCAAGGATCAGAGCTTGTTCCTGCCACTTGGGCATCATGTTGATTTAT ACTATCCTTCCCGCAAGAGATCTCGCATTACAGTACCGTTCCTCTTCAATTTCGAGCAAAAGAAGCAGGCTTCCATAGATGTTCTTCCTGACGAGTGCCT CTTCGAAGTGTTCCGACGCTTGGAGGGCCAAGAGAGGAGCGCTTCCGCTTGTGTTTCGAAGCGGTGGCTCGGTCTTCTGAGCAGCATTCGTAAGGAAGAA CTCGCTGTAGTGGAAGCCGAGGCGGATTCTGAATCTTCTGATGGTGGTTACCTCTCCAGGAGCTTGGAGGGGAAGAAGGCTACGGATGTTCGACTTTCGG CCATTGCAGTTGGAACTACAACTCGTGGAGGGTTGGGGAAGCTTTCGGTTCGTGGAGGAGGATGCAAGGTGACGAATTTGGGGCTTCGTGCTGTTGGTCG GTGCTGCGGTTCACTAAAGGTTCTGTCTTTATGGAATTTGACATCGGTTAGCGACGAAGGGTTGACCGAAATCGGTGAAGGATGCCGGCAGCTGGAGAAA CTTGATCTATGTCAGTGCCCTGGAATCACTGACAAGAGTTTGAAGGCTATTGCGAGGAACTGTCCGAATCTGACCGATCTGACCATCGAGTCGTGTGCCA ACATTGGGAACGAAGGGCTCCAAGCCATCGGCCAGTCGTGTGCGAATTTGACATCCGTTTCGATCAAGAATTGTCTTGCTGTCGGTGATCAAGGGATTAG TGGACTGGTATCTTCGGCCTCTTATTCTTTAACGAAGATAAAGCTTCAATCTTTGAACATCACTGATGTGTCTCTAGCTGTGATCGGGCACTATGGGAAA GCGGTAACCGATCTTGTGCTATCCGTCCTTCCGAATGTTACCGAAAGAGGGTTTTGGGTCATGGGAAATGGCAATGGGTTGCAGAAATTGAAGTCGTTCT CGGTTACTTCCTGCATCGGTGCCACTGATGCTGGGCTCGAGGCTGTGGCAAAAGGTTGTCCGAATTTGAAGCAGTTCTGTCTCCGTAAGTGTGCGTTCTT ATCCGACAATGGATTGGTTGCTTTTGTCAAGAATTCAGCGACACTAGAGAGCATGCAATTGGAAGAGTGCCACAGGATCACCCAGTTCGGGTTTTTCGGT TCCATTTTGAACTGTGCCACAAAGCTGAAAGCTTTTTCTCTGGTGAGTTGCTTGGGCATCAAGGATCTCGATGCTGGAGCATCCGTGCCTTCGCCATGCG AATCCCTTCGATCATTGTCAATCCACAACTGCCCCGGGTTTGGCGATGGTAGCTTGTCCTTTCTAGGGAAGCTGTGCCCTCAACTTCAGAATTTGGAATT AACCGGTCTCCGAGGAGTAACCGATTCTGGTTTGCTCGAACTACTTGGAAGCTGCAAGTCCGGTCTTGTGAAGGTCAACCTCGGTGGATGTGTCAATTTG TCAGATAGAATCGTCATGGAGTTGTCCGAGCATCACGGTTGGACCCTCGAGAAGTTGAATCTCGAGGGATGTAGCAAGATGACCGATACGAGTTTATCGG CTATTTCAAAAGGCTGTCTCTTGCTGAGTGATCTCGACGTCTCCAAATGCTCAATCACCGATGCTGGCATCACATCCCTTGCTTCTTCGGGGTTGCTTGG TCTGCAAATCTTCTCCATTTCTGGTTGCCCCATGATATCAGACAAGAGTTTCCAAAGCCTAATGTTGCTCGGACAAACCCTTCTTGGGCTTAGCCTTCAG CACTGCAATGCAATCAGCAGCAGGACCGTCGAGCTTCTCGTGGAACGACTCTGGAGGTGCGATGTGCTGTGTTAA
AA sequence Show only first row Show all	>Lus10002913 pacid=23148594 polypeptide=Lus10002913 locus=Lus10002913.g ID=Lus10002913.BGIv1.0 annot-version=v1.0 MSQLFGFAGSDDFYSSNPKDQSLFLPLGHHVDLYYPSRKRSRITVPFLFNFEQKKQASIDVLPDECLFEVFRRLEGQERSASACVSKRWLGLLSSIRKEE LAVVEAEADSESSDGGYLSRSLEGKKATDVRLSAIAVGTTTRGGLGKLSVRGGGCKVTNLGLRAVGRCCGSLKVLSLWNLTSVSDEGLTEIGEGCRQLEK LDLCQCPGITDKSLKAIARNCPNLTDLTIESCANIGNEGLQAIGQSCANLTSVSIKNCLAVGDQGISGLVSSASYSLTKIKLQSLNITDVSLAVIGHYGK AVTDLVLSVLPNVTERGFWVMGNGNGLQKLKSFSVTSCIGATDAGLEAVAKGCPNLKQFCLRKCAFLSDNGLVAFVKNSATLESMQLEECHRITQFGFFG SILNCATKLKAFSLVSCLGIKDLDAGASVPSPCESLRSLSIHNCPGFGDGSLSFLGKLCPQLQNLELTGLRGVTDSGLLELLGSCKSGLVKVNLGGCVNL SDRIVMELSEHHGWTLEKLNLEGCSKMTDTSLSAISKGCLLLSDLDVSKCSITDAGITSLASSGLLGLQIFSISGCPMISDKSFQSLMLLGQTLLGLSLQ HCNAISSRTVELLVERLWRCDVLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002913 [exp]	0	1
AT1G23780			F-box family protein (.1)		Lus10012441 [exp]	1.4	0.8898
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002014 [exp]	2.4	0.8586
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10029784 [exp]	4.5	0.8573
AT3G18310			unknown protein		Lus10023992 [exp]	5.9	0.8467
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10036330 [exp]	6.0	0.8202
AT3G58050			unknown protein		Lus10017239 [exp]	7.1	0.8582
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Lus10023659 [exp]	7.2	0.8169
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Lus10019709 [exp]	8.0	0.8331
AT2G31820			Ankyrin repeat family protein ...		Lus10027075 [exp]	12.0	0.8288
AT5G35160			Endomembrane protein 70 protei...		Lus10027831 [exp]	14.5	0.8339

Compare expression of checked genes

Lus10002913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.