Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32340 84 / 5e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80130 79 / 6e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G20190 74 / 5e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G17940 57 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29670 46 / 1e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04530 42 / 0.0002 TPR4 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07280 41 / 0.0007 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002013 [exp] 341 / 2e-118 AT4G32340 152 / 5e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043266 [exp] 80 / 1e-17 AT5G20190 162 / 1e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019409 [exp] 80 / 1e-17 AT5G20190 164 / 1e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030103 [exp] 78 / 1e-16 AT5G20190 179 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002166 [exp] 74 / 3e-15 AT5G20190 192 / 8e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024949 [exp] 59 / 1e-09 AT4G17940 125 / 8e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022877 [exp] 56 / 1e-08 AT4G17940 121 / 5e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014468 [exp] 55 / 2e-08 AT1G04530 177 / 1e-51 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023721 [exp] 55 / 3e-08 AT1G04530 171 / 4e-49 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G254300 [exp] 94 / 8e-23 AT4G32340 157 / 2e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G068200 [exp] 75 / 2e-15 AT5G20190 167 / 6e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130100 [exp] 74 / 5e-15 AT5G20190 180 / 5e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130300 [exp] 71 / 3e-14 AT5G20190 166 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G140500 [exp] 62 / 4e-11 AT4G17940 196 / 9e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G172200 [exp] 49 / 1e-06 AT1G04530 137 / 1e-36 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G256900 [exp] 49 / 1e-06 AT4G17940 125 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G191600 [exp] 47 / 1e-05 AT2G29670 328 / 3e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G065400 [exp] 45 / 3e-05 AT1G04530 160 / 5e-46 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G250100 [exp] 45 / 5e-05 AT2G29670 499 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002914 pacid=23148608 polypeptide=Lus10002914 locus=Lus10002914.g ID=Lus10002914.BGIv1.0 annot-version=v1.0 ATGCTTCTCCGGAGCTCCTCAACGCCGCTCATGAAGAGTCTGGTCGGCCAATGGTGCGTCGTGCCGGAAATCGACGGCAGTTCCCCGACCTCCAAATATT CCCACATCAGCCCTAAATTCTCCCCGCTCCGCCAGGCCGCCGTGTCTCTGAAACGGACGTCGTCTGAGGGGGATCTGAAATTCCTTCCCAAGACGGGGAA ATCGAAGCCGGCGAAAGAGTATTCGCAGCCTCCGCTGCCGTCTCCGCTGCAGCGGACGTCGTCGTTGGAAGACGCGGCGAGGAGCGTGATCGCGGCGGTG GAGGAGGACGAGGAGGAGGCCATGGAGTTGGGGTTTGGTGGAGATGGCGGCGGCGAAGGTAGGTTTCCGGAGGGCGGCGGAGGGGGATCATCTGGTGGCG GCGAGACGGAGCTGATGGATAAGTATTACCGGGATATGATTATTATGTATCCCGGCGACGAGCTTCTGCTATCAAATTACGCCAAGTTCCTGAAAGACGT CCGCGGCGACGATGTCAGGGCGGAGGAGGACTGCGAGCGTGCGATTCTGGTTAACGCTGGCGACGGAGGCGTGCTGTCGATTAATGTGCTGGCGTCGTAT GCGCGATTCTTGTGGGACGTGGAGGAAGAGGCGGAGGAGGAAGAGGAAGAGGACGACCAGCAATTCCAGCAATCAGCCGGCGGTGGCAGGAGAATGAACC AGTCGCAGCCGCCACTGAATATGGGGATTGGGTTTGGAACCATGGGGATTGGATTTGGAACCGAATTAGGATTCCGGCAGCTACTTCATGAGATGAATTG A
AA sequence Show only first row Show all	>Lus10002914 pacid=23148608 polypeptide=Lus10002914 locus=Lus10002914.g ID=Lus10002914.BGIv1.0 annot-version=v1.0 MLLRSSSTPLMKSLVGQWCVVPEIDGSSPTSKYSHISPKFSPLRQAAVSLKRTSSEGDLKFLPKTGKSKPAKEYSQPPLPSPLQRTSSLEDAARSVIAAV EEDEEEAMELGFGGDGGGEGRFPEGGGGGSSGGGETELMDKYYRDMIIMYPGDELLLSNYAKFLKDVRGDDVRAEEDCERAILVNAGDGGVLSINVLASY ARFLWDVEEEAEEEEEEDDQQFQQSAGGGRRMNQSQPPLNMGIGFGTMGIGFGTELGFRQLLHEMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32340			Tetratricopeptide repeat (TPR)...		Lus10002914 [exp]	0	1
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10042127 [exp]	3.9	0.7989
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10019609 [exp]	9.4	0.8214
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10017459 [exp]	18.4	0.7755
AT3G10400		U11/U12-31K	U11/U12-31K, RNA recognition m...		Lus10037960 [exp]	21.2	0.7834
AT5G18610			Protein kinase superfamily pro...		Lus10012814 [exp]	33.0	0.7870
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10021746 [exp]	45.1	0.7550
AT1G65280			DNAJ heat shock N-terminal dom...		Lus10017919 [exp]	58.7	0.7597
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013494 [exp]	66.8	0.7728
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10007964 [exp]	68.2	0.7650
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008492 [exp]	69.3	0.7483

Compare expression of checked genes

Lus10002914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.