Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32330 219 / 4e-67 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT2G25480 203 / 2e-61 TPX2 (targeting protein for Xklp2) protein family (.1) AT2G35880 154 / 2e-42 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G23090 120 / 7e-31 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT5G28646 110 / 3e-28 WVD2 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G04630 105 / 1e-25 WDL1 WVD2-like 1 (.1.2.3) AT1G54460 103 / 1e-24 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70950 97 / 1e-21 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G01015 43 / 0.0002 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002012 [exp] 275 / 1e-89 AT4G32330 141 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10016193 [exp] 152 / 3e-41 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10029355 [exp] 151 / 5e-41 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10021223 [exp] 125 / 2e-32 AT3G23090 230 / 4e-73 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10005533 [exp] 120 / 4e-31 AT1G54460 187 / 3e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10006563 [exp] 120 / 6e-31 AT1G54460 187 / 2e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10022213 [exp] 122 / 8e-31 AT3G23090 220 / 2e-68 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10022003 [exp] 112 / 6e-28 AT1G54460 172 / 3e-51 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10042543 [exp] 112 / 7e-28 AT1G54460 176 / 1e-52 TPX2 (targeting protein for Xklp2) protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G254400 [exp] 288 / 5e-94 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.018G027500 [exp] 276 / 3e-89 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.006G200400 [exp] 149 / 5e-40 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.016G066600 [exp] 147 / 1e-39 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G162800 [exp] 130 / 3e-34 AT3G23090 214 / 1e-66 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.010G076200 [exp] 130 / 4e-34 AT3G23090 185 / 5e-55 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.005G055900 [exp] 122 / 2e-31 AT1G54460 207 / 4e-64 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.013G042800 [exp] 113 / 4e-28 AT1G54460 176 / 5e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G129300 [exp] 98 / 6e-22 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G113000 [exp] 95 / 7e-21 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Lus10002915 pacid=23148605 polypeptide=Lus10002915 locus=Lus10002915.g ID=Lus10002915.BGIv1.0 annot-version=v1.0 ATGGATAAGGACGGTCTTATGCTCAGTGATGGGTCTGAGATGGCTCATCAAAATGGAGACCATGATTACAATGAGGTCTCTGGAGAGGTTGATGTTGTTT CAAGCAACATGAATGGAGCTGTGGGGAAAACATTGGAGCCTAAAGGTCCACATCAGTATGAAGAGAATGAATTGAAGTTGGATTTTGATGCTGTGACCAT TGAAGATTCTGACGTTCCTATGGAAGTAGTCGGGGTGAAAGATGCGGATCACTCCGAGAAGGCACAATTGACAAAGGGTCTAGGAAAGAGCAAGAATGAG AAGCCTATGAACCTAAAGAAAGCATCAGGCACGCAGCCGGTGAAGAGCAAAGATTCGAAAACAGTTGCCAATGGTACTCCTGCTCTGAATTCACGAGCAA AGCAAGTCCAGACCATTAAGCAGCAGACTGGGAAGTCAGAAGCAGCACCTTCTGAAACCGTCGTAAAGAAAACAACACTGAAACCCTTGAAGAAAGCACC TGTCGCTAAAGCTGAAGAAGATGTGCAATCTGCTTCGGAAGGGGCCCTTCCAAACTATGGCTTTAGCTTCAAGTGTGATGAACGAGCTGAGAAAAGGAGA GAGTTCTATACCAAACTTGGGGAAAAGATTCAGGCAAAAGAAGTAGAAAAGACTACTATGCAGGCCAAGTCCAAGGAATCTCAAGAAGCTGAGCTCAAGC AGCTGAGAAAGAGTTTGAACTTTAAAGCGACACCGATGCCTACCTTCTATCAGGAGCCTCCCCCACCCAGGACCGAGCTAAAGAAGATACCAACGACGAG GCCAAAGTCACCGAAGTTGGGTAGAAGGAAGAGCTCGTCGGGTGCCGATGCTGAAGGAAATAATACCAAGACGAATGGATCAGGTCGGTTAAGCATGGAT GCTCGAGTGACTCAGACTACTACTACCTCTACCGCGAAGGATGCCCCCCTTGTAATTCCAAAGAAGCAATCTCGTAAGTCGCTCCCCAGACTTCCCTCTC AGAAGACTAGTTTGATCAAGAACAACCTGAAAACTGCAGCCCCCAAACCGGCGAGTACAGCCTCCGAGTCGAAGCCCGAAGTGAACGAAACATGTCCTCC TCCACGAGCCAAGGTTAGCGAAATGGAACCGGACGAAGAGCAAAAGTTGGCTGAATCCAGTGTGCCGGAAGTGATAGAAGTGGAGCCTTAA
AA sequence Show only first row Show all	>Lus10002915 pacid=23148605 polypeptide=Lus10002915 locus=Lus10002915.g ID=Lus10002915.BGIv1.0 annot-version=v1.0 MDKDGLMLSDGSEMAHQNGDHDYNEVSGEVDVVSSNMNGAVGKTLEPKGPHQYEENELKLDFDAVTIEDSDVPMEVVGVKDADHSEKAQLTKGLGKSKNE KPMNLKKASGTQPVKSKDSKTVANGTPALNSRAKQVQTIKQQTGKSEAAPSETVVKKTTLKPLKKAPVAKAEEDVQSASEGALPNYGFSFKCDERAEKRR EFYTKLGEKIQAKEVEKTTMQAKSKESQEAELKQLRKSLNFKATPMPTFYQEPPPPRTELKKIPTTRPKSPKLGRRKSSSGADAEGNNTKTNGSGRLSMD ARVTQTTTTSTAKDAPLVIPKKQSRKSLPRLPSQKTSLIKNNLKTAAPKPASTASESKPEVNETCPPPRAKVSEMEPDEEQKLAESSVPEVIEVEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002915 [exp]	0	1
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10016092 [exp]	1.7	0.8771
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10031409 [exp]	2.2	0.8651
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10011189 [exp]	3.0	0.8702
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10043053 [exp]	3.0	0.8527
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10010892 [exp]	4.0	0.8691
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10036914 [exp]	4.0	0.8558
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10025643 [exp]	5.1	0.8746
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Lus10036962 [exp]	7.7	0.8373
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	8.1	0.8640
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	8.8	0.8623

Compare expression of checked genes

Lus10002915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.