Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32320 328 / 1e-112 APX6 ascorbate peroxidase 6 (.1) AT3G09640 151 / 2e-44 APX1B, APX2 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) AT4G35970 137 / 1e-38 APX5 ascorbate peroxidase 5 (.1) AT4G35000 135 / 1e-37 APX3 ascorbate peroxidase 3 (.1) AT1G07890 130 / 2e-36 ATAPX01, CS1, APX1, MEE6, ATAPX1 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) AT4G08390 120 / 3e-31 SAPX stromal ascorbate peroxidase (.1.2.3.4) AT1G77490 117 / 6e-30 TAPX thylakoidal ascorbate peroxidase (.1) AT5G47000 85 / 1e-18 Peroxidase superfamily protein (.1) AT4G17690 82 / 2e-17 Peroxidase superfamily protein (.1) AT5G40150 81 / 3e-17 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019906 [exp] 145 / 5e-42 AT3G09640 424 / 2e-152 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Lus10014128 [exp] 137 / 3e-38 AT4G35000 441 / 1e-157 ascorbate peroxidase 3 (.1) Lus10019781 [exp] 137 / 5e-38 AT4G35000 433 / 8e-154 ascorbate peroxidase 3 (.1) Lus10013537 [exp] 132 / 6e-37 AT1G07890 445 / 1e-160 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10015970 [exp] 132 / 2e-36 AT1G07890 436 / 3e-156 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10000180 [exp] 132 / 3e-36 AT4G35000 372 / 3e-130 ascorbate peroxidase 3 (.1) Lus10028432 [exp] 124 / 2e-33 AT4G35000 337 / 6e-117 ascorbate peroxidase 3 (.1) Lus10025680 [exp] 116 / 3e-29 AT1G77490 584 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10018155 [exp] 110 / 3e-27 AT1G77490 560 / 0.0 thylakoidal ascorbate peroxidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G254500 [exp] 370 / 7e-129 AT4G32320 392 / 5e-137 ascorbate peroxidase 6 (.1) Potri.009G015400 [exp] 142 / 6e-41 AT1G07890 370 / 4e-131 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Potri.016G084800 [exp] 142 / 7e-41 AT3G09640 410 / 8e-147 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.004G174500 [exp] 142 / 3e-40 AT4G35000 423 / 6e-151 ascorbate peroxidase 3 (.1) Potri.006G132200 [exp] 140 / 3e-40 AT3G09640 442 / 2e-159 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.009G134100 [exp] 137 / 1e-38 AT4G35000 454 / 8e-163 ascorbate peroxidase 3 (.1) Potri.005G112200 [exp] 136 / 5e-38 AT4G35000 438 / 1e-156 ascorbate peroxidase 3 (.1) Potri.002G081900 [exp] 121 / 1e-31 AT1G77490 514 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.005G179200 [exp] 120 / 6e-31 AT1G77490 556 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.012G076500 [exp] 96 / 1e-22 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10002916 pacid=23148599 polypeptide=Lus10002916 locus=Lus10002916.g ID=Lus10002916.BGIv1.0 annot-version=v1.0 ATGAAACCTTTAGCAATATCCCGCCTCAAGCTTTCTCTATTCCACTCCAATTCCTTCTTCTCTTCATCTCCAACACTCAAATTTCCCTCCGCCGTCGATG TCCGCTGCAAATCCGTCCGAGACAGTGATGCTGGGGAGGATTGTGATTGGGTTTCAGGTGGACGCAGGAGAATGCTCGTCTCCATTTCCACGCTTCCGTT TCTAACTGGTTTGCAATTCAATGCCAGTGCCACTGACGAGTTAGGCTTGGATGCTAGTGGGCTGATAAGGGAAGAGGCAAGGAAAGTAGTGACAAAGGGC AGGGCTGCTGGCGTGCTTCGTCTTGCCTTTCATGATGCAGGAACCTTTGACATCAGTGAGAAATCAGGCGGTATGAACGGTTCGATAATCTACGAGCTCG GAAGGCCTGAAAATACTGGTTTAAACAAGTCAGTGAAGGCAATATCCTGGGCAGACATGATTGCTCTTTCTGGAGCTGAAGCAGTTTCCATCTGTGGTGG TCCTTCAATCCCCCTTCGAATCGGCAGACTGGATTCAATGGAAGCTGATGCAGAAGGCAGACTTCCTGAAGAAACATTGGATGCTCCTGGTTTGAAGCAA TCCTTCCGAAGCAAAGGCCTATCGACGCAAGAACTTGTTGCATTGTCTGGAGCTCATACTCTTGGCAGTAAAGGATTTGGGAACCCAATCGTCTTCGACA ATTCTTACTACAAAATCCTTCTTGAGAAGCCATGGATGTCCTCGGTTGGCATGACGAACATGGTGGGGCTTCCTTCGGACCGTGCACTTGTCGAAGACGA TGAATGTCTAAGATGGATAGAAGTGTATGCGGGTGATGAGGAGATGTTCTTCCAAGATTTCAAGACTGCATATACCAAACTTGTGAACTCTGGCGCAATG TGGAAAAGCGCTTAG
AA sequence Show only first row Show all	>Lus10002916 pacid=23148599 polypeptide=Lus10002916 locus=Lus10002916.g ID=Lus10002916.BGIv1.0 annot-version=v1.0 MKPLAISRLKLSLFHSNSFFSSSPTLKFPSAVDVRCKSVRDSDAGEDCDWVSGGRRRMLVSISTLPFLTGLQFNASATDELGLDASGLIREEARKVVTKG RAAGVLRLAFHDAGTFDISEKSGGMNGSIIYELGRPENTGLNKSVKAISWADMIALSGAEAVSICGGPSIPLRIGRLDSMEADAEGRLPEETLDAPGLKQ SFRSKGLSTQELVALSGAHTLGSKGFGNPIVFDNSYYKILLEKPWMSSVGMTNMVGLPSDRALVEDDECLRWIEVYAGDEEMFFQDFKTAYTKLVNSGAM WKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Lus10002916 [exp]	0	1
AT2G21385			unknown protein		Lus10017494 [exp]	1.4	0.9745
AT5G66470			RNA binding;GTP binding (.1)		Lus10014289 [exp]	2.0	0.9752
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10038770 [exp]	4.9	0.9732
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	4.9	0.9719
AT4G20760			NAD(P)-binding Rossmann-fold s...		Lus10038343 [exp]	5.1	0.9548
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028726 [exp]	5.5	0.9527
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	5.5	0.9695
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10004319 [exp]	5.7	0.9563
AT5G55220			trigger factor type chaperone ...		Lus10010250 [exp]	5.7	0.9616
AT2G43030			Ribosomal protein L3 family pr...		Lus10013640 [exp]	5.9	0.9620

Compare expression of checked genes

Lus10002916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.