Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32300 895 / 0 SD2-5 S-domain-2 5 (.1) AT5G35370 394 / 8e-124 S-locus lectin protein kinase family protein (.1) AT1G34300 370 / 4e-115 lectin protein kinase family protein (.1) AT5G24080 341 / 1e-108 Protein kinase superfamily protein (.1) AT2G19130 349 / 2e-107 S-locus lectin protein kinase family protein (.1) AT4G00340 313 / 4e-94 RLK4 receptor-like protein kinase 4 (.1) AT5G20050 292 / 3e-90 Protein kinase superfamily protein (.1) AT5G60900 268 / 3e-78 RLK1 receptor-like protein kinase 1 (.1) AT3G17420 255 / 5e-76 GPK1 glyoxysomal protein kinase 1 (.1) AT3G25560 258 / 1e-75 NIK2 NSP-interacting kinase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000249 [exp] 1467 / 0 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10043391 [exp] 719 / 0 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10028067 [exp] 405 / 2e-128 AT5G35370 844 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039315 [exp] 377 / 2e-117 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10006052 [exp] 342 / 1e-104 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10028711 [exp] 331 / 4e-103 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10033748 [exp] 330 / 6e-101 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033032 [exp] 305 / 4e-95 AT5G20050 483 / 4e-169 Protein kinase superfamily protein (.1) Lus10039732 [exp] 306 / 1e-91 AT2G19130 647 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G254600 [exp] 1019 / 0 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.018G027300 [exp] 1007 / 0 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.002G086500 [exp] 437 / 2e-140 AT5G35370 952 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G013797 [exp] 410 / 3e-130 AT5G35370 751 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G115700 [exp] 385 / 5e-121 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G086300 [exp] 361 / 8e-112 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.019G086400 [exp] 358 / 1e-110 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.013G115800 [exp] 357 / 1e-110 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.019G086200 [exp] 357 / 3e-110 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.004G061900 [exp] 358 / 1e-109 AT4G32300 402 / 3e-126 S-domain-2 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10002917 pacid=23148609 polypeptide=Lus10002917 locus=Lus10002917.g ID=Lus10002917.BGIv1.0 annot-version=v1.0 ATGGAAGGGATCAGAAGCTTTCTGGGCTGGATTCAATTCCTGCTGCTGTTTCTTCTTCAATGGCGAAATTGCACAGCTGGAGTCAGATACATAGGCAGAT TGGATCCAGGGTTCCAAGGAGCGCAAATGAACTGGATTGACAACGCCGGAATCTTCCTCCTCTCCAACAACTCCCTCTACGGATTCGGATTCAGAACAAC ATCCCCTGACGTCACCAAGTTCTTGCTCGTCGTCATCCACATGAGCACCACCAAACCCATCTGGGCCGCCAATAGAGGGAATCCGGTGTCCAATTCCGAC AACTTCATCTTCACCAAAGACGGCAAAGTTTCCCTACAGAAAGCTGGGAAGTCACTCTGGACAGCTGGAAAGTCAATTTCATCAATCCAGATGTTGGATT CAGGGAATTTGGTGTTTGTTGATGGTGGTGGAGAAAGGGTTTGGGAGAGCTTTGGTTATCCTACTGATACTCTCATCACAGGACAGGATTTCACTGAAAG GATGAGTCTTGTTAGTGATCCAGCTAGCTCTAGTAACTTGACTTACACACTCCGGATAGAATCAGGAGATTTGACTCTTTCTGCAGGTTTCAGAACTCCT CAGCAGTACTGGTCGATGGCGCGCGACAGTCGGAGGACTATCAACAGCAATGGTGGTGGAGGTAGAGGTGTGTCAGTTGCTACCATTGAAGGGAATTCAT GGAAGCTTTATGATAGTTCAAAAAGGCAGCTGCTTTCTCAGTTCATTTTTTCTGACAGCTCAGCAGGATATTCCACTTGGATTGTAGTTATGGGGAGTGA TGGATACATCTCTTTCTACAATCTTGATTCTAGAGGAGAAAATGTTGCGGCGGCTCCCACTAAGATACCGGATGATCCGTGTGATCGTCCGGTATCTTGT GGGGCGTATTTGGTCTGTTCTAGTAACAATGTTTGTCAATGTCCTTCGATTCTCAGCTCTCAACAGAATTGCAACCCGGGGATAACGAGCAATTCGTGCA AAAAAGCATCGACCGGTTCGACATTACTCGTTGATGCTGGGAATCAGATTAACTACTTTGCAGTTGGCTTTATGAAGCCAACTATTTCAAAGACTGATTT GGAGAGGTGCAAATCATCCTGCAGTGGAAACTGTTCTTGCCTTGCATTGTTCTTTTCGAGTGGTTCCGGGAGTTGCTTCCTTTTCGATGATTTAGGTAGC TTTACTACAGGGTCGAGTAACAGTCCTTCAGGGTTGAGTGCATTTATCAAAGTGTTGAACAATGGAGGAAGCAGAACAGCAAGCAGTACCGGAAACCGGT TTCCATTCGGTGCTATCATAGCGATAGCTGTCACGACTGTGTTGGTAATTTTCGGTTTACTCTTCGTGGCATTTCGGATTTACAGGACAAAGAGCCGGTT GCAAGAATCTCTGAGAGGGTACTCGTCCGAAGATGATGGTACTTTCCTGGAGAATCTGTCAGGAATGCCGGTCCGGTTTAGCTACAAGGAGCTTCAGACC GCAACCAATAACTTCTCGGTCAAGCTTGGACAAGGAGGGTTTGGTTCGGTTTACCAAGGGGTTTTACTCGACGGGACGAGGCTGGCAGTGAAGAAGCTGG AAGGTATTGGCCAGGGCAAGAAGGAGTTTCGAGCCGAGGTTAGCATAATTGGGAGTGTGCATCACCATCATTTGGTGAGGCTGAAAGGATTCTGCGCCGA AGGGAGCCACCGGATGCTGGCATACGAGTTCATGGCGAACGGTTCGTTGGAGCAATGGATCTTCAAGAGGAAGGATGAAGAAGAGTTCCTTCTGGATTGG GAGACAAGGTTCAGCATTGCACTGGGGACGGCCAAAGGGCTGGCTTATCTACACCAGGATTGCGATGTCAAGATCGTACATTGCGATATCAAGCCCGAGA ATGTGCTCCTCGACGACAATTTTCTCGCCAAAGTCTCCGACTTTGGACTCGCCAAGCTGATGACCAGAGAGCAGAGCCATGTGTTCACCACCATGAGAGG CACCAGAGGGTACCTGGCACCCGAATGGATAACGAACTACGCGATCTCGGAGAAGAGCGACGTGTACAGCTATGGTATGCTACTCCTCGAGATCATCAGC GGGAGGAAGAACTTCATCCAGCCTACCGGGGAGAACTCCTCCGAGAAGTCTCATTTCCCTTCCTACGCATTCAAAATGATGGAGGAAGGAAAGCTGAGGG AGATCCTCGACTCGAAGCTGAAGCTCGACGAGAAAGACGAGAGGGTTGGGACCGCCATCAAAGTGGCATTGTGGTGCATACAGGAAGATATGAATGTGAG GCCATCAATGACCAAAGTGGTACAGATGCTCGAAGGAATCTACACTGTTCCAAAGCCTCCGACATCCTCGCCATTGACCGCCCGGCTCTATTCGGGGATC TTCAGGTCAATCAGCGAGGAAGGAGCTTCTTCAGGTCCATCAGATTGCAACAGTGATGCTTATCAGTCTGCTGTACGGCTTTCAGGGCCGAGATGA
AA sequence Show only first row Show all	>Lus10002917 pacid=23148609 polypeptide=Lus10002917 locus=Lus10002917.g ID=Lus10002917.BGIv1.0 annot-version=v1.0 MEGIRSFLGWIQFLLLFLLQWRNCTAGVRYIGRLDPGFQGAQMNWIDNAGIFLLSNNSLYGFGFRTTSPDVTKFLLVVIHMSTTKPIWAANRGNPVSNSD NFIFTKDGKVSLQKAGKSLWTAGKSISSIQMLDSGNLVFVDGGGERVWESFGYPTDTLITGQDFTERMSLVSDPASSSNLTYTLRIESGDLTLSAGFRTP QQYWSMARDSRRTINSNGGGGRGVSVATIEGNSWKLYDSSKRQLLSQFIFSDSSAGYSTWIVVMGSDGYISFYNLDSRGENVAAAPTKIPDDPCDRPVSC GAYLVCSSNNVCQCPSILSSQQNCNPGITSNSCKKASTGSTLLVDAGNQINYFAVGFMKPTISKTDLERCKSSCSGNCSCLALFFSSGSGSCFLFDDLGS FTTGSSNSPSGLSAFIKVLNNGGSRTASSTGNRFPFGAIIAIAVTTVLVIFGLLFVAFRIYRTKSRLQESLRGYSSEDDGTFLENLSGMPVRFSYKELQT ATNNFSVKLGQGGFGSVYQGVLLDGTRLAVKKLEGIGQGKKEFRAEVSIIGSVHHHHLVRLKGFCAEGSHRMLAYEFMANGSLEQWIFKRKDEEEFLLDW ETRFSIALGTAKGLAYLHQDCDVKIVHCDIKPENVLLDDNFLAKVSDFGLAKLMTREQSHVFTTMRGTRGYLAPEWITNYAISEKSDVYSYGMLLLEIIS GRKNFIQPTGENSSEKSHFPSYAFKMMEEGKLREILDSKLKLDEKDERVGTAIKVALWCIQEDMNVRPSMTKVVQMLEGIYTVPKPPTSSPLTARLYSGI FRSISEEGASSGPSDCNSDAYQSAVRLSGPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10002917 [exp]	0	1
AT1G48960			Adenine nucleotide alpha hydro...		Lus10038945 [exp]	2.0	0.9223
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10018667 [exp]	2.6	0.9321
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Lus10027321 [exp]	2.8	0.9053
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033392 [exp]	3.2	0.9293
AT1G63855			Putative methyltransferase fam...		Lus10041869 [exp]	4.7	0.9039
AT2G37840			Protein kinase superfamily pro...		Lus10022593 [exp]	6.9	0.8991
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027429 [exp]	7.7	0.9045
AT1G75510			Transcription initiation facto...		Lus10010631 [exp]	8.1	0.9097
AT2G21120			Protein of unknown function (D...		Lus10010893 [exp]	8.5	0.9050
AT4G15630			Uncharacterised protein family...		Lus10012809 [exp]	8.8	0.8925

Compare expression of checked genes

Lus10002917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.