Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32295 98 / 2e-25 unknown protein AT3G24150 92 / 2e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001504 [exp] 122 / 2e-34 AT4G32295 208 / 9e-67 unknown protein Lus10043262 [exp] 93 / 1e-22 AT3G24150 258 / 7e-84 unknown protein Lus10019404 [exp] 91 / 2e-22 AT3G24150 251 / 6e-82 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G254700 [exp] 104 / 6e-27 AT4G32295 243 / 8e-79 unknown protein Potri.018G027100 [exp] 103 / 1e-26 AT4G32295 238 / 6e-77 unknown protein Potri.018G128700 [exp] 90 / 3e-22 AT3G24150 248 / 1e-80 unknown protein Potri.006G067100 [exp] 90 / 1e-21 AT3G24150 259 / 2e-83 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002918 pacid=23148590 polypeptide=Lus10002918 locus=Lus10002918.g ID=Lus10002918.BGIv1.0 annot-version=v1.0 ATGACCAAGAAGAACAACGAATGGCAGGATAAGCTCCCTGCTGTGGTTCTCAGAGCAGAAGAAACACACTACTCCAAAGCCAATTCTCAATTCAAGTTCA TTCATTTATGTGATTCTGTCGCTTTTATGTATAAAGATGATTCTTTTCTCTCTTTTGACAAAAAGGCTGAGTATATGGACCTCGCAACCCTTTGGGATCG GACCAATGATGCCATCAACACCATCATTCGCCGTGATGGCGATACTGAAACCGGCCAGCTCCTTCATCCTTGCATTGAAGCTCATTCTGCACCTTCATTG AGTACCTTCACTCGCTGTGATTGCACAACATCAACAAAAGCATCCTTCAATCGTCCTCACTCACAACGATCTAGGCCGAACTTCCAAAAGATATTATCTT TTTCGCAGATTCTAAATGCCAAGCATTGTCCTAGTCGAATCAGGATTCGTTACCAGCTGTTTGCAGAGTTGCGTGAATCTGGAGGTCGGCCTTGTTAG
AA sequence Show only first row Show all	>Lus10002918 pacid=23148590 polypeptide=Lus10002918 locus=Lus10002918.g ID=Lus10002918.BGIv1.0 annot-version=v1.0 MTKKNNEWQDKLPAVVLRAEETHYSKANSQFKFIHLCDSVAFMYKDDSFLSFDKKAEYMDLATLWDRTNDAINTIIRRDGDTETGQLLHPCIEAHSAPSL STFTRCDCTTSTKASFNRPHSQRSRPNFQKILSFSQILNAKHCPSRIRIRYQLFAELRESGGRPC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32295			unknown protein		Lus10002918 [exp]	0	1
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	8.9	0.9697
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10023448 [exp]	9.6	0.9448
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10042506 [exp]	14.1	0.9687
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10004688 [exp]	17.4	0.9669
AT2G21650	MYB	RSM1, ATRL2, ME...	RADIALIS-LIKE SANT/MYB 1, MATE...		Lus10040453 [exp]	19.1	0.9666
AT1G07900	AS2	LBD1	LOB domain-containing protein ...		Lus10033843 [exp]	19.5	0.8745
AT5G37930			Protein with RING/U-box and TR...		Lus10009111 [exp]	20.0	0.8688
AT3G03210			unknown protein		Lus10007384 [exp]	20.9	0.9076
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10026295 [exp]	21.9	0.9643
AT1G31310	Trihelix		hydroxyproline-rich glycoprote...		Lus10040629 [exp]	22.4	0.9596

Compare expression of checked genes

Lus10002918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.